v1.3.6

What's Changed

• Release 1.3.6 by @catalamarti in #14

Full Changelog: v1.3.4...v1.3.6

v1.3.4

What's Changed

• Handle edge case in concept set expression import by @catalamarti in #793
• Add elapsed time calculation to log summary by @catalamarti in #795
• Remove specimen_source_concept_id from fieldTablesColumns by @catalamarti in #797
• Add methods for concept classes by @catalamarti in #796

Full Changelog: v1.3.3...v1.3.4

v1.3.3

What's Changed

• add unique argument in assertLogical by @catalamarti in #782
• Fix non UTF-8 issues (any collected character non UTF-8 is eliminated) by @catalamarti in #778
• concept set to also import codelists by @catalamarti in #787
• logging explain is now TRUE/FALSE option to add in the same log file by @catalamarti in #785

Full Changelog: v1.3.2...v1.3.3

v1.3.2

What's Changed

• Fix typo in compute timing by @edward-burn in #763
• Add stable badge by @catalamarti in #769
• Allow to extract all codelists of a cohort with cohortCodelist() by @catalamarti in #770
• Export sql and explain sql can be added to the result object by @catalamarti in #765
• Create as_tibble() method for concept_set_expression by @catalamarti in #774
• newConceptSetExpression() accepts codelists as inputs by @catalamarti in #773
• exportConceptSetExpression() exports codelists as concept_set_expression by @catalamarti in #773

Full Changelog: v1.3.1...v1.3.2

v1.3.1

What's Changed

• The time a query takes to copute is included in log file by @edward-burn in #737
• Create emptyConceptSetExpression function by @edward-burn #735
• Empty codelist has class codelist by @edward-burn in #734
• Correct typo for condition_era_id by @catalamarti in #727
• Add ... argument to insertTable by @catalamarti in #725
• observation_period and person are no longer required in the cdm object @catalamarti #746
• Create function omopDataFolder() for the management of OMOP related data @catalamarti #747
• Remove tictoc from suggests and use base R by @catalamarti #748
• Support end and start date for table payer_plan_period by @catalamarti #749
• validate cohortId in recordCohortAttrition by @catalamarti #750
• Add separate vignette for suppression by @catalamarti #751
• Depend on dbplyr 2.5.1 to be able to use the new translations of clock by @catalamarti #754
• Add methods to support local datasets by @catalamarti in #757
• Cast columns for local cdms by @catalamarti #758

Full Changelog: v1.3.0...v1.3.1

v1.3.0

What's Changed

• write method fro summary.cdm_source by @catalamarti in #719 #720
• Add query id in logging files by @catalamarti in #716
• Expanding omopgenerics vignette by @catalamarti in #721
• Indexes experimental functions by @catalamarti in #722 #723 #724

Full Changelog: v1.2.0...v1.3.0

v1.2.0

What's Changed

• Remove NA in estimates in transformToSummarisedResult by @catalamarti in #702
• Create logging functions by @catalamarti in #700
• Allow strata to be a character by @catalamarti in #703
• Remove settings that are NA after filterSettings by @catalamarti in #704
• validateWindowArgument force snake_case names by @catalamarti in #711
• Keep cohort_table class after collect by @catalamarti in #710
• dplyr::as_tibble for codelist by @catalamarti in #712
• type -> codelist_type by @catalamarti in #709

Full Changelog: v1.1.0...v1.2.0

v1.1.0

What's Changed

• more general cdm validation checks by @edward-burn in darwin-eu-dev/omopgenerics#674
• typo in validateConceptSet by @catalamarti in darwin-eu-dev/omopgenerics#673
• fix call argument by @catalamarti in darwin-eu-dev/omopgenerics#677
• fix tempdir("...") by @catalamarti in darwin-eu-dev/omopgenerics#679
• new function createSummarisedResult by @catalamarti in darwin-eu-dev/omopgenerics#676
• Release 1.1.0 by @catalamarti in darwin-eu-dev/omopgenerics#680

Full Changelog: v1.0.0...v1.1.0

v1.0.0

What's Changed

• make validateCdmSource checks type insensitive by @IoannaNika in darwin-eu-dev/omopgenerics#612
• allow int64 as codelist input by @catalamarti in darwin-eu-dev/omopgenerics#626
• drop settings, attrition and codelist by @catalamarti in darwin-eu-dev/omopgenerics#628
• deprecate dropTable by @catalamarti in darwin-eu-dev/omopgenerics#629
• add better error if extra columns are provided by @catalamarti in darwin-eu-dev/omopgenerics#630
• account for already suppressed counts by @catalamarti in darwin-eu-dev/omopgenerics#631
• correct typo in conceptSet validation by @catalamarti in darwin-eu-dev/omopgenerics#632
• account for NA name if null = TRUE by @catalamarti in darwin-eu-dev/omopgenerics#634
• add validateNameStyle by @catalamarti in darwin-eu-dev/omopgenerics#636
• export validateOmopTable by @catalamarti in darwin-eu-dev/omopgenerics#635
• Account for different encodings by @catalamarti in darwin-eu-dev/omopgenerics#640
• multiple reasons provided by @catalamarti in darwin-eu-dev/omopgenerics#641
• Add examples for validate functions by @catalamarti in darwin-eu-dev/omopgenerics#644
• dropTable returns a cdm or cdm_source so validateCdmSource is failing for database cdms by @ablack3 in darwin-eu-dev/omopgenerics#643
• create validateColumn by @catalamarti in darwin-eu-dev/omopgenerics#633
• Issue 557 by @catalamarti in darwin-eu-dev/omopgenerics#647
• add requiredTables argument by @catalamarti in darwin-eu-dev/omopgenerics#649
• Better document validate functions by @catalamarti in darwin-eu-dev/omopgenerics#652
• delete permanently validateResultArguemnt by @catalamarti in darwin-eu-dev/omopgenerics#653
• Update methodListSourceTables.R by @catalamarti in darwin-eu-dev/omopgenerics#655
• validateStrataArgument by @catalamarti in darwin-eu-dev/omopgenerics#654
• add numberSubjects numberRecords utility functions by @catalamarti in darwin-eu-dev/omopgenerics#656
• export validateCdmTable by @catalamarti in darwin-eu-dev/omopgenerics#657
• add c and bind methods for codelist by @catalamarti in darwin-eu-dev/omopgenerics#658
• dropTable -> dropSourceTable by @catalamarti in darwin-eu-dev/omopgenerics#659
• unite to modify settings by @catalamarti in darwin-eu-dev/omopgenerics#660
• add checkAttributes argument by @catalamarti in darwin-eu-dev/omopgenerics#661
• more explicit message for extra columns in summarised_result by @catalamarti in darwin-eu-dev/omopgenerics#663
• eliminate 'exclusion crietria' by @catalamarti in darwin-eu-dev/omopgenerics#664
• create validateAchillesTable by @catalamarti in darwin-eu-dev/omopgenerics#665
• eliminate compute by @catalamarti in darwin-eu-dev/omopgenerics#662
• add cdmDisconnect by @catalamarti in darwin-eu-dev/omopgenerics#642
• read multiple tables by @catalamarti in darwin-eu-dev/omopgenerics#669
• Add insertCdmTo by @catalamarti in darwin-eu-dev/omopgenerics#670
• Release 1.0.0 by @catalamarti in darwin-eu-dev/omopgenerics#671

New Contributors

• @IoannaNika made their first contribution in darwin-eu-dev/omopgenerics#612

Full Changelog: v0.4.0...v1.0.0

v0.4.0

What's Changed

• Address problem with min_cell_count by @catalamarti in darwin-eu-dev/omopgenerics#539
• add Additional to grouping by @catalamarti in darwin-eu-dev/omopgenerics#541
• improve summarised result vignette by @catalamarti in darwin-eu-dev/omopgenerics#548
• log prefix and explain by @edward-burn in darwin-eu-dev/omopgenerics#547
• allow character and tidyselect functions in cohortId by @catalamarti in darwin-eu-dev/omopgenerics#530
• column functions by @ilovemane in darwin-eu-dev/omopgenerics#524
• Update links by @catalamarti in darwin-eu-dev/omopgenerics#551
• Update methodBind.R by @catalamarti in darwin-eu-dev/omopgenerics#553
• fix typo by @edward-burn in darwin-eu-dev/omopgenerics#562
• treat integer and numeric as interchangeable by @edward-burn in darwin-eu-dev/omopgenerics#563
• add dropExtraColumns by @catalamarti in darwin-eu-dev/omopgenerics#555
• Fix #515 by @MimiYuchenGuo in darwin-eu-dev/omopgenerics#525
• To not suppress if minCellCount = 0/1/NULL by @catalamarti in darwin-eu-dev/omopgenerics#568
• gives the problematic table or column name in the error by @edward-burn in darwin-eu-dev/omopgenerics#569
• "offset" -> offset by @catalamarti in darwin-eu-dev/omopgenerics#570
• add group + strata + additional to columns in settings by @catalamarti in darwin-eu-dev/omopgenerics#571
• functions for summarised_result by @nmercadeb in darwin-eu-dev/omopgenerics#558
• remove metadata from settingColumns default by @catalamarti in darwin-eu-dev/omopgenerics#576
• remove explicit omopgenerics:: calls by @catalamarti in darwin-eu-dev/omopgenerics#579
• tidy to work with settings columns by @catalamarti in darwin-eu-dev/omopgenerics#580
• export and import using csv files by @catalamarti in darwin-eu-dev/omopgenerics#582
• add min_cell_count = "0" by default by @catalamarti in darwin-eu-dev/omopgenerics#583
• Move unite functions from visOmopResults to omopgenerics by @nmercadeb in darwin-eu-dev/omopgenerics#588
• suppress NA -> "-" by @catalamarti in darwin-eu-dev/omopgenerics#592
• allow multiple equal levels by @catalamarti in darwin-eu-dev/omopgenerics#591
• deprecate participants by @catalamarti in darwin-eu-dev/omopgenerics#593
• add warning for multiple result types in tidy by @catalamarti in darwin-eu-dev/omopgenerics#594
• add column functions to reexports by @catalamarti in darwin-eu-dev/omopgenerics#595
• add arguments to validate result argument by @catalamarti in darwin-eu-dev/omopgenerics#577
• validateNewColumn by @catalamarti in darwin-eu-dev/omopgenerics#513
• release 0.4.0 by @catalamarti in darwin-eu-dev/omopgenerics#596

Full Changelog: darwin-eu-dev/omopgenerics@v0.3.1...v0.4.0