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This was referenced Jul 24, 2025
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atarva regions files for all ref genomes don't produce duplicate rows where a locus has multiple motifs update all the atarva files after script changed move atarva files into catalog directory
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## Description Adds catalogs for several new genotypers Replaces: #238 Should be merged before: #260 Related issues: #237 #185 #167 ## Major Changes - New genotyping and annotation catalogs: Atarva, LongTR, Straglr, Stranger - Improve look and functionality of catalog download table - Moved catalogs to `data/catalogs` subdirectory and renamed files for consistency - Change the way flanking motifs are described and handled (including schema update) ## Minor Changes - Minor edits to POLG and the FAME loci to improve catalog generation ## Checklist - [x] All changes are well summarized - [x] Check all tests pass - [x] Check that the website preview looks good - [x] Update the STRchive version in `CITATION.cff`, format X.Y.Z. If any major changes, increment Y. If only minor changes, increment Z. If the breaking change (rare), increment X. - [x] Ask someone to review this PR --------- Co-authored-by: Vincent Rubinetti <vince.rubinetti@gmail.com>
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Description
Adding atarva region files to allow STRchive loci to be genotyped with atarva
Still to do:
Major Changes
Minor Changes
Checklist
CITATION.cff, format X.Y.Z. If any major changes, increment Y. If only minor changes, increment Z. If the breaking change (rare), increment X.