Skip to content
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
21,977 changes: 11,639 additions & 10,338 deletions data/STRchive-citations.json

Large diffs are not rendered by default.

58 changes: 29 additions & 29 deletions data/STRchive-loci.json

Large diffs are not rendered by default.

210 changes: 203 additions & 7 deletions data/literature/AR_batch_01.txt
Original file line number Diff line number Diff line change
@@ -1,4 +1,199 @@

PMID- 41762523
OWN - NLM
STAT- Publisher
LR - 20260228
IS - 2352-3964 (Electronic)
IS - 2352-3964 (Linking)
VI - 125
DP - 2026 Feb 26
TI - Short tandem repeat expansions in patients with neurodegenerative dementia.
PG - 106190
LID - S2352-3964(26)00072-1 [pii]
LID - 10.1016/j.ebiom.2026.106190 [doi]
AB - BACKGROUND: Due to the overlapping clinical features of neurodegenerative
dementia (NDD)-including Alzheimer's disease (AD), frontotemporal dementia (FTD),
dementia with Lewy bodies (DLB), and progressive supranuclear palsy (PSP),
accurate diagnosis remains challenging in early stages. Multiple dementias can be
caused by short tandem repeat (STR) expansions. However, systematic investigation
of known pathogenic STRs in large dementia cohorts remains lacking. METHODS: We
used ExpansionHunter (EH) to assess 22 neurodegenerative disease-associated STRs
in whole-genome sequencing (WGS) data from 950 patients with AD, 222 patients
with FTD, 165 patients with DLB, 231 patients with PSP, and 1522 cognitively
normal controls. Repeat primed-polymerase chain reaction (RP-PCR) was performed
to validate EH calls that exceeded the intermediate thresholds of STR. We also
attempted to use ExpansionHunter Denovo (EHDn) to detect C9orf72 expansions
missed by EH. FINDINGS: EHDn improved the detection rate of C9orf72 expansions.
After sample quality control, 33 PCR-validated pathogenic expansions were
identified in nine genes (C9orf72, ATXN8OS, NOTCH2NLC, HTT, FMR1, DMPK, AR,
CACNA1A, and PPP2R2B) among 1559 patients with NDD, accounting for 2.12% of
cases. Burden-based logistic regression analyses demonstrated that the presence
of pathogenic STR expansions was significantly associated with NDD status (OR =
3.57, p = 4.70 x 10(-2)). Additionally, intermediate-length TBP alleles showed a
nominal enrichment in PSP compared with controls (2.61% vs 0.54%; OR = 6.25, p =
2.00 x 10(-2)). INTERPRETATION: Our findings provide evidence for the clinical
pleiotropy of STRs in NDD and their involvement in NDD pathogenesis. FUNDING:
This study was supported by the National Natural Science Foundation of
China(U22A20300, 82502244, 823714434, 82071216), the National Key R&D Program of
China(2023YFC3603700), STI2030-Major Projects(2021ZD0201803), Outstanding Youth
Fund of Hunan Provincial Natural Science Foundation(2024JJ2097), Youth Fund of
Hunan Provincial Natural Science Foundation(2025JJ60696), Hunan Health Commission
Grant(20232460), Postdoctoral Fellowship Program of CPSF(GZC20233185), China
Postdoctoral Science Foundation (2025M772318), and the Scientific Research
Program of FuRong Laboratory (2024PT5108).
CI - Copyright (c) 2026 The Author(s). Published by Elsevier B.V. All rights reserved.
FAU - Zhu, Yuan
AU - Zhu Y
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China.
FAU - Xiao, Xuewen
AU - Xiao X
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China.
FAU - Liu, Yiliang
AU - Liu Y
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China.
FAU - Wang, Zheng
AU - Wang Z
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China; National Clinical Research Center for Geriatric Disorders, Central South
University, Changsha, China.
FAU - Luo, Tengfei
AU - Luo T
AD - National Clinical Research Center for Geriatric Disorders, Central South
University, Changsha, China.
FAU - Xu, Tianyan
AU - Xu T
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China.
FAU - Yang, Qijie
AU - Yang Q
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China.
FAU - Hao, Xiaoli
AU - Hao X
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China.
FAU - Zhang, Cong
AU - Zhang C
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China.
FAU - Zhang, Sizhe
AU - Zhang S
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China.
FAU - Luo, Shilin
AU - Luo S
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China; Engineering Research Center of Hunan Province in Cognitive Impairment
Disorders, Central South University, Changsha, China.
FAU - Zhou, Yafang
AU - Zhou Y
AD - Engineering Research Center of Hunan Province in Cognitive Impairment Disorders,
Central South University, Changsha, China; Department of Geriatrics, Xiangya
Hospital, Central South University, Changsha, China; Hunan International
Scientific and Technological Cooperation Base of Neurodegenerative and
Neurogenetic Diseases, Changsha, China; Key Laboratory of Hunan Province in
Neurodegenerative Disorders, Central South University, Changsha, China.
FAU - Liao, Xinxin
AU - Liao X
AD - Engineering Research Center of Hunan Province in Cognitive Impairment Disorders,
Central South University, Changsha, China; Department of Geriatrics, Xiangya
Hospital, Central South University, Changsha, China; Hunan International
Scientific and Technological Cooperation Base of Neurodegenerative and
Neurogenetic Diseases, Changsha, China; Key Laboratory of Hunan Province in
Neurodegenerative Disorders, Central South University, Changsha, China.
FAU - Tian, Yun
AU - Tian Y
AD - Engineering Research Center of Hunan Province in Cognitive Impairment Disorders,
Central South University, Changsha, China; Department of Geriatrics, Xiangya
Hospital, Central South University, Changsha, China; Hunan International
Scientific and Technological Cooperation Base of Neurodegenerative and
Neurogenetic Diseases, Changsha, China; Key Laboratory of Hunan Province in
Neurodegenerative Disorders, Central South University, Changsha, China.
FAU - Weng, Ling
AU - Weng L
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China; Engineering Research Center of Hunan Province in Cognitive Impairment
Disorders, Central South University, Changsha, China; Hunan International
Scientific and Technological Cooperation Base of Neurodegenerative and
Neurogenetic Diseases, Changsha, China; Key Laboratory of Hunan Province in
Neurodegenerative Disorders, Central South University, Changsha, China.
FAU - Fang, Liangjuan
AU - Fang L
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China; Engineering Research Center of Hunan Province in Cognitive Impairment
Disorders, Central South University, Changsha, China; Hunan International
Scientific and Technological Cooperation Base of Neurodegenerative and
Neurogenetic Diseases, Changsha, China; Key Laboratory of Hunan Province in
Neurodegenerative Disorders, Central South University, Changsha, China.
FAU - Tang, Beisha
AU - Tang B
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China; National Clinical Research Center for Geriatric Disorders, Central South
University, Changsha, China; Engineering Research Center of Hunan Province in
Cognitive Impairment Disorders, Central South University, Changsha, China; Hunan
International Scientific and Technological Cooperation Base of Neurodegenerative
and Neurogenetic Diseases, Changsha, China; Key Laboratory of Hunan Province in
Neurodegenerative Disorders, Central South University, Changsha, China.
FAU - Jiao, Bin
AU - Jiao B
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China; Engineering Research Center of Hunan Province in Cognitive Impairment
Disorders, Central South University, Changsha, China; Hunan International
Scientific and Technological Cooperation Base of Neurodegenerative and
Neurogenetic Diseases, Changsha, China; Key Laboratory of Hunan Province in
Neurodegenerative Disorders, Central South University, Changsha, China.
FAU - Li, Jinchen
AU - Li J
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China; National Clinical Research Center for Geriatric Disorders, Central South
University, Changsha, China; Bioinformatics Center, Furong Laboratory and Xiangya
Hospital, Central South University, Changsha, China. Electronic address:
lijinchen@csu.edu.cn.
FAU - Shen, Lu
AU - Shen L
AD - Department of Neurology, Xiangya Hospital, Central South University, Changsha,
China; National Clinical Research Center for Geriatric Disorders, Central South
University, Changsha, China; Engineering Research Center of Hunan Province in
Cognitive Impairment Disorders, Central South University, Changsha, China; Hunan
International Scientific and Technological Cooperation Base of Neurodegenerative
and Neurogenetic Diseases, Changsha, China; Key Laboratory of Hunan Province in
Neurodegenerative Disorders, Central South University, Changsha, China;
Bioinformatics Center, Furong Laboratory and Xiangya Hospital, Central South
University, Changsha, China; FuRong Laboratory, Changsha, Hunan, China.
Electronic address: shenlu@csu.edu.cn.
LA - eng
PT - Journal Article
DEP - 20260226
PL - Netherlands
TA - EBioMedicine
JT - EBioMedicine
JID - 101647039
SB - IM
OTO - NOTNLM
OT - C9orf72 expansion
OT - Neurodegenerative dementia
OT - Short tandem repeat (STR)
OT - TBP repeat
OT - Whole-genome sequencing (WGS)
COIS- Declaration of interests All authors declare no financial or non-financial
competing interests.
EDAT- 2026/02/28 12:54
MHDA- 2026/02/28 12:54
CRDT- 2026/02/28 11:39
PHST- 2025/10/28 00:00 [received]
PHST- 2026/02/12 00:00 [revised]
PHST- 2026/02/12 00:00 [accepted]
PHST- 2026/02/28 12:54 [medline]
PHST- 2026/02/28 12:54 [pubmed]
PHST- 2026/02/28 11:39 [entrez]
AID - S2352-3964(26)00072-1 [pii]
AID - 10.1016/j.ebiom.2026.106190 [doi]
PST - aheadofprint
SO - EBioMedicine. 2026 Feb 26;125:106190. doi: 10.1016/j.ebiom.2026.106190.

PMID- 41564929
OWN - NLM
STAT- Publisher
Expand Down Expand Up @@ -3247,7 +3442,7 @@ PMID- 37936145
OWN - NLM
STAT- MEDLINE
DCOM- 20231109
LR - 20231129
LR - 20260217
IS - 1757-2215 (Electronic)
IS - 1757-2215 (Linking)
VI - 16
Expand Down Expand Up @@ -3436,15 +3631,16 @@ PL - England
TA - J Ovarian Res
JT - Journal of ovarian research
JID - 101474849
RN - 0 (Receptors, Androgen)
RN - 80497-65-0 (Anti-Mullerian Hormone)
RN - 0 (Receptors, Androgen)
SB - IM
MH - Female
MH - Humans
MH - Anti-Mullerian Hormone
MH - *Polycystic Ovary Syndrome
MH - Receptors, Androgen/genetics
MH - Polymorphism, Genetic
MH - Anti-Mullerian Hormone
MH - Receptors, Androgen/genetics
MH - Practice Guidelines as Topic
PMC - PMC10629046
OTO - NOTNLM
OT - Androgen receptor
Expand Down Expand Up @@ -23720,6 +23916,7 @@ PST - ppublish
SO - Hum Mol Genet. 2012 Oct 1;21(19):4225-36. doi: 10.1093/hmg/dds246. Epub 2012 Jun
26.


PMID- 22731640
OWN - NLM
STAT- MEDLINE
Expand Down Expand Up @@ -23818,7 +24015,6 @@ PST - ppublish
SO - Genet Test Mol Biomarkers. 2012 Aug;16(8):835-40. doi: 10.1089/gtmb.2011.0322.
Epub 2012 Jun 25.


PMID- 22653589
OWN - NLM
STAT- MEDLINE
Expand Down Expand Up @@ -38111,7 +38307,7 @@ PT - Research Support, Non-U.S. Gov't
PL - Brazil
TA - Braz J Med Biol Res
JT - Brazilian journal of medical and biological research = Revista brasileira de
pesquisas medicas e biologica
pesquisas medicas e biologicas
JID - 8112917
RN - 0 (Genetic Markers)
RN - 0 (Receptors, Androgen)
Expand Down Expand Up @@ -41222,6 +41418,7 @@ AID - 10.1038/sj.leu.2401631 [doi]
PST - ppublish
SO - Leukemia. 2000 Jan;14(1):207-12. doi: 10.1038/sj.leu.2401631.


PMID- 10617922
OWN - NLM
STAT- MEDLINE
Expand Down Expand Up @@ -41309,7 +41506,6 @@ AID - 10.1076/opge.20.4.243.2273 [doi]
PST - ppublish
SO - Ophthalmic Genet. 1999 Dec;20(4):243-9. doi: 10.1076/opge.20.4.243.2273.


PMID- 10574254
OWN - NLM
STAT- MEDLINE
Expand Down
Loading