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@TaylorKT TaylorKT commented Nov 7, 2025

Closes #318

Updates the instructions in Episode 6 to include directions to remove line numbers from the file produced by redirecting the output of the history command to the dc_workshop_log.sh file. This fixes a bug identified in #318 where the script will fail to run due to the presence of line numbers.

This PR implements the suggestion of p-j-smith in the linked issue.

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github-actions bot commented Nov 7, 2025

Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

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  • 🖼️ correct figures
  • ❓ new warnings
  • ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/datacarpentry/shell-genomics/compare/md-outputs..md-outputs-PR-372

The following changes were observed in the rendered markdown documents:

 06-organization.md | 2 ++
 md5sum.txt         | 2 +-
 2 files changed, 3 insertions(+), 1 deletion(-)
What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2025-11-07 18:54:55 +0000

github-actions bot pushed a commit that referenced this pull request Nov 7, 2025
Co-authored-by: Alison Meynert <ameynert@gmail.com>
@TaylorKT TaylorKT merged commit 802fd4e into datacarpentry:main Nov 7, 2025
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github-actions bot pushed a commit that referenced this pull request Nov 7, 2025
github-actions bot pushed a commit that referenced this pull request Nov 7, 2025
Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Nov 7, 2025
Auto-generated via `{sandpaper}`
Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Nov 11, 2025
Auto-generated via `{sandpaper}`
Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Nov 18, 2025
Auto-generated via `{sandpaper}`
Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Nov 25, 2025
Auto-generated via `{sandpaper}`
Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Dec 2, 2025
Auto-generated via `{sandpaper}`
Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Dec 9, 2025
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Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Dec 16, 2025
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Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Dec 23, 2025
Auto-generated via `{sandpaper}`
Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Dec 30, 2025
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Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Jan 6, 2026
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Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Jan 20, 2026
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Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Jan 24, 2026
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Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Jan 24, 2026
Auto-generated via `{sandpaper}`
Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
github-actions bot pushed a commit that referenced this pull request Jan 24, 2026
Auto-generated via `{sandpaper}`
Source  : f45f04a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-11-07 18:56:33 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 802fd4e
Branch  : main
Author  : Kate Taylor <156236911+TaylorKT@users.noreply.github.com>
Time    : 2025-11-07 18:55:19 +0000
Message : Updates instruction to remove line numbers in script in Episode 6 (#372)

* Update 06-organization.md

* Update episodes/06-organization.md

Co-authored-by: Alison Meynert <ameynert@gmail.com>

---------

Co-authored-by: Alison Meynert <ameynert@gmail.com>
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Episode 6. Addition of a "cut" command to remove line numbers in history

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