Switching Recurrent Neural Networks

This repo is about the work of Switching Recurrent Neural Networks (SRNNs). Publication available at: Inference of neural dynamics using switching recurrent neural networks

Installation for Development

conda env create --file environment_srnn.yml
conda activate SwitchingRNN

If environment is not built successfully, do 'pip install'+all missed packages, they are common packages in this experiment.
python 1_demo_lorenz.py (example running)
or open demo_lorenz.ipynb

Name		Name	Last commit message	Last commit date
Latest commit History 19 Commits
SRNN		SRNN
data		data
result		result
ssm		ssm
0_demo_lorenz.ipynb		0_demo_lorenz.ipynb
0_demo_lorenz_kmeans_initial.ipynb		0_demo_lorenz_kmeans_initial.ipynb
0_demo_lorenz_random_initial.ipynb		0_demo_lorenz_random_initial.ipynb
1_demo_analysis.ipynb		1_demo_analysis.ipynb
1_demo_lorenz.py		1_demo_lorenz.py
README.md		README.md
celegans_SRNN.ipynb		celegans_SRNN.ipynb
environment_srnn.yml		environment_srnn.yml