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66 changes: 66 additions & 0 deletions source/_data/pub.bib
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@Article{Shi_arXiv_2025_p2503.06039,
author = {Guoyong Shi and Fenglin Deng and Ri He and Dachuan Chen and Xuejiao
Chen and Peiheng Jiang and Zhicheng Zhong},
title = {{Temperature-driven structural phase transitions in SmNiO{\$}{\_}3{\$}:
insights from deep potential molecular dynamics simulations}},
journal = {arXiv},
year = 2025,
pages = {2503.06039},
doi = {10.48550/arXiv.2503.06039},
abstract = {The metal-insulator transition (MIT) in rare-earth nickelates
exemplifies the intricate interplay between electronic correlations
and lattice dynamics in quantum materials. This work focuses on
SmNiO{\$}{\_}3{\$} as a prototypical system, employing molecular
dynamics simulations based on a {''}hidden{''} magnetic potential
model. Our simulations reveal two key findings. First, the structural
phase transition in SmNiO{\$}{\_}3{\$} is intrinsically temperature-
driven and occurs spontaneously via collective lattice distortions.
Moreover, systematic high-pressure simulations demonstrate a distinct
pressure dependence of the transition temperature, which decreases
monotonically with increasing external hydrostatic pressure. These
results provide atomistic insights into the cooperative mechanisms
underlying the MIT and the interplay between structural distortions
and electron correlation effects. The computational approach developed
herein offers a generalizable framework for investigating complex
phase transitions in correlated quantum materials.},
}

@Article{Pei_arXiv_2025_p2406.05797,
author = {Qizhi Pei and Rui Yan and Kaiyuan Gao and Jinhua Zhu and Lijun Wu},
title = {{3D-MolT5: Leveraging Discrete Structural Information for Molecule-Text
Modeling}},
journal = {arXiv},
year = 2025,
pages = {2406.05797},
doi = {10.48550/arXiv.2406.05797},
abstract = {The integration of molecular and natural language representations has
emerged as a focal point in molecular science, with recent
advancements in Language Models (LMs) demonstrating significant
potential for comprehensive modeling of both domains. However,
existing approaches face notable limitations, particularly in their
neglect of three-dimensional (3D) information, which is crucial for
understanding molecular structures and functions. While some efforts
have been made to incorporate 3D molecular information into LMs using
external structure encoding modules, significant difficulties remain,
such as insufficient interaction across modalities in pre-training and
challenges in modality alignment. To address the limitations, we
propose {\textbackslash}textbf{\{}3D-MolT5{\}}, a unified framework
designed to model molecule in both sequence and 3D structure spaces.
The key innovation of our approach lies in mapping fine-grained 3D
substructure representations into a specialized 3D token vocabulary.
This methodology facilitates the seamless integration of sequence and
structure representations in a tokenized format, enabling 3D-MolT5 to
encode molecular sequences, molecular structures, and text sequences
within a unified architecture. Leveraging this tokenized input
strategy, we build a foundation model that unifies the sequence and
structure data formats. We then conduct joint pre-training with multi-
task objectives to enhance the model's comprehension of these diverse
modalities within a shared representation space. Thus, our approach
significantly improves cross-modal interaction and alignment,
addressing key challenges in previous work. Further instruction tuning
demonstrated that our 3D-MolT5 has strong generalization ability and
surpasses existing methods with superior performance in multiple
downstream tasks. Our code is available at
https://github.com/QizhiPei/3D-MolT5.},
}

@Article{Chen_arXiv_2025_p2506.00880,
author = {Zhuo Chen and Yizhen Zheng and Huan Yee Koh and Hongxin Xiang and
Linjiang Chen and Wenjie Du and Yang Wang},
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