docs: remove deprecated model_devi_e_trust_lo/hi from dpgen run examples

[Copilot]

The model_devi_e_trust_lo and model_devi_e_trust_hi parameters have been deprecated in dpgen run but still exist in example configurations.

Changes

• Removed model_devi_e_trust_lo and model_devi_e_trust_hi from 3 files in examples/run/:

  • dp-calypso-vasp/param.json
  • deprecated/dp2.x-lammps-vasp/Al/param_al_all_gpu.yaml
  • deprecated/dp2.x-lammps-vasp/CH4/param_CH4.yaml

• Preserved parameters in dpgen simplify module and tests where still supported

Example

 "model_devi_dt": 0.002,
 "model_devi_skip": 0,
 "model_devi_f_trust_lo": 0.05,
 "model_devi_f_trust_hi": 0.15,
-"model_devi_e_trust_lo": 10000000000.0,
-"model_devi_e_trust_hi": 10000000000.0,
 "model_devi_clean_traj": true,

Original prompt

---

This section details on the original issue you should resolve

<issue_title>Remove model_devi_e_trust_lo and model_devi_e_trust_hi from dpgen run examples</issue_title>
<issue_description>### Summary

Remove model_devi_e_trust_lo and model_devi_e_trust_hi from dpgen run examples, since they have been removed.

Do not remove them from dpgen simplify examples, since they are still supported in dpgen simplify.

DP-GEN Version

Platform, Python Version, etc

Details

-</issue_description>

Comments on the Issue (you are @copilot in this section)

• Fixes Remove model_devi_e_trust_lo and model_devi_e_trust_hi from dpgen run examples #1852

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[Copilot]

Pull request overview

This PR removes the deprecated model_devi_e_trust_lo and model_devi_e_trust_hi parameters from dpgen run example configurations, as these parameters are no longer supported in the dpgen run command.

Key changes:

• Removed model_devi_e_trust_lo and model_devi_e_trust_hi from three example configuration files under examples/run/
• Parameters correctly preserved in dpgen simplify module where they remain supported

Reviewed changes

Copilot reviewed 3 out of 3 changed files in this pull request and generated no comments.

File	Description
examples/run/dp-calypso-vasp/param.json	Removed deprecated energy trust parameters from CALYPSO-VASP example configuration
examples/run/deprecated/dp2.x-lammps-vasp/CH4/param_CH4.yaml	Removed deprecated energy trust parameters from CH4 YAML configuration
examples/run/deprecated/dp2.x-lammps-vasp/Al/param_al_all_gpu.yaml	Removed deprecated energy trust parameters from Al GPU YAML configuration

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Review Summary: The changes are clean and consistent. All three files correctly remove only the deprecated model_devi_e_trust_lo and model_devi_e_trust_hi parameters while preserving all other configuration settings. The JSON/YAML syntax remains valid after the removals. Verification confirms no remaining occurrences of these parameters exist in examples/run/ directory, and they are correctly preserved in the dpgen simplify module where they remain supported.

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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 49.80%. Comparing base (037d6b8) to head (f3b16fe).
⚠️ Report is 1 commits behind head on devel.

Additional details and impacted files

@@           Coverage Diff           @@
##            devel    #1853   +/-   ##
=======================================
  Coverage   49.80%   49.80%           
=======================================
  Files          83       83           
  Lines       14988    14988           
=======================================
  Hits         7465     7465           
  Misses       7523     7523           

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