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Add limitGenomeGenerateRAM and genomeSAindexNbases to STAR build via rsem-prepare-reference#228

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MikeWLloyd wants to merge 4 commits intodeweylab:masterfrom
MikeWLloyd:star-build-memory-alloc
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Add limitGenomeGenerateRAM and genomeSAindexNbases to STAR build via rsem-prepare-reference#228
MikeWLloyd wants to merge 4 commits intodeweylab:masterfrom
MikeWLloyd:star-build-memory-alloc

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@MikeWLloyd MikeWLloyd commented Jun 30, 2025

Add STAR build options: --limitGenomeGenerateRAM and --genomeSAindexNbases. These additions provide options for users in #135, #147, and others (nf-core/rnaseq#511), who wish to use rsem-prepare-reference with --star but encounter errors due to genome size etc.

@MikeWLloyd MikeWLloyd changed the title Star build memory alloc Add limitGenomeGenerateRAM and genomeSAindexNbases to STAR build via rsem-prepare-reference Jun 30, 2025
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