Tuesday Simmons, A. B. Styer, Grady Pierroz, A. Pedro Gonçalves, Ramji Pasricha, Amrita B. Hazra, Patricia Bubner, Devin Coleman-Derr
doi:
Included in this repository are...
- feature-table.biom - an unfiltered ASV table created via QIIME2 and DADA2
- metadata.txt - all of the metadata associated with samples
- tree.nwk - a newick-format tree file that corresponds to the feature table
- taxonomy.tsv - a table of taxonomic assignments for each ASV
- rep-seqs.fasta - a fasta file of a representative sequence for each ASV
- scripts.mainFigs.Rmd - an R markdown file with scripts to remake all main figures
- scripts.suppFigs.Rmd - an R markdown file with scripts to remake all supplemental figures
Raw sequence files have been uploaded to the NCBI SRA under BioProject PRJNA607579 and are publicly available.