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Snakemake prototype support#2

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denis-yuen merged 14 commits intomainfrom
snakemake_experiment
Apr 2, 2025
Merged

Snakemake prototype support#2
denis-yuen merged 14 commits intomainfrom
snakemake_experiment

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@denis-yuen denis-yuen commented Mar 18, 2025

Supports parts of the RecommendedPluginInterface plugin
Helps me/team understand follow-up tasks (split up in JIRA)
See follow-up tickets linked to https://ucsc-cgl.atlassian.net/browse/SEAB-6726 for future development in 1.17 and 1.18
This may/may not be sufficient for grant application purposes, should probably prioritize https://ucsc-cgl.atlassian.net/browse/SEAB-7015 to allow us to control when to expose this to users

Can eventually work up to CompletePluginInterface plugin

Screenshot from 2025-03-18 15-10-55

Screenshot from 2025-03-18 15-22-19

Screenshot from 2025-03-18 15-56-51

Screenshot from 2025-03-19 11-22-07

@denis-yuen denis-yuen changed the title Snakemake experiment Snakemake prototype support Mar 24, 2025
@denis-yuen denis-yuen marked this pull request as ready for review March 25, 2025 15:30
@denis-yuen denis-yuen requested review from a team, hyunnaye, kathy-t and svonworl and removed request for a team March 25, 2025 15:31
@denis-yuen denis-yuen requested a review from svonworl March 26, 2025 19:24
@denis-yuen denis-yuen requested review from svonworl and removed request for svonworl March 27, 2025 21:17
@denis-yuen denis-yuen requested review from hyunnaye and kathy-t and removed request for hyunnaye and kathy-t April 1, 2025 14:21
@denis-yuen denis-yuen merged commit a3ebcff into main Apr 2, 2025
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@denis-yuen denis-yuen deleted the snakemake_experiment branch April 2, 2025 14:33
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3 participants