GitHub - dudzicp/ig_repertoire_constructor: An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis

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An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis

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Name		Name	Last commit message	Last commit date
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configs		configs
data		data
docs		docs
ext		ext
pipeline_makefiles		pipeline_makefiles
py		py
src		src
teamcity		teamcity
test_dataset		test_dataset
.gitignore		.gitignore
CMakeLists.txt		CMakeLists.txt
GPLv2.txt		GPLv2.txt
LICENSE		LICENSE
Makefile		Makefile
README		README
VERSION		VERSION
barcodedIgReC_manual.html		barcodedIgReC_manual.html
barcoded_igrec.py		barcoded_igrec.py
dense_subgraph_finder.py		dense_subgraph_finder.py
diversity_analyzer.py		diversity_analyzer.py
diversity_analyzer_manual.html		diversity_analyzer_manual.html
dsf_manual.html		dsf_manual.html
ig_simulator.py		ig_simulator.py
ig_simulator_manual.html		ig_simulator_manual.html
igquast.py		igquast.py
igquast_manual.html		igquast_manual.html
igrec.py		igrec.py
init.py		init.py
manual.html		manual.html
mass_spectra_analyzer.py		mass_spectra_analyzer.py

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IgRepertoireConstructor
Algorithm for construction of antibody repertoire from NGS data and immunoproteogenomics analysis
Version: see VERSION

Developed in Center for Algorithmic Biotechnology, Saint-Petersburg State University

Current IgRepertoireConstructor contributors:

    Yana Safonova,
    Alexander Shlemov,
    Andrey Bzikadze,
    Sergey Bankevich,
    Alla Lapidus, and
    Pavel A. Pevzner

Also contributed:

    Eugene Kurpilyansky,
    Ekaterina Starostina

Installation instructions and manual can be found on the website:
http://yana-safonova.github.io/ig_repertoire_constructor/

References:

Yana Safonova, Stefano Bonissone, Eugene Kurpilyansky, Ekaterina Starostina, Alla Lapidus, Jeremy Stinson, 
Laura DePalatis, Wendy Sandoval, Jennie Lill and Pavel A. Pevzner.
IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis. Bioinformatics. 2015 Jun 15;31(12):i53-i61.