What's Changed
- Update README.md by @cwarlysolsberg in #212
- Update ancestry.py by @cwarlysolsberg in #210
- Update qc.py by @cwarlysolsberg in #209
- Update genotools_function_guide.md by @cwarlysolsberg in #208
- add neural admixture + relabel problematic EUR samples by @mkoretsky1 in #214
- clean up common_snps later in the pipeline by @mkoretsky1 in #216
- keep ref_common_snps around until the end of ancestry as well by @mkoretsky1 in #217
- id to csv not chr by @mkoretsky1 in #218
- plink2 exec fix by @mkoretsky1 in #219
- add dir name to path by @mkoretsky1 in #220
- add logging to neural-admixture commands to get a better sense of the… by @mkoretsky1 in #221
- add ref snps to exclude in haplotype prune method by @dvitale199 in #222
- remove get_eur_admixed commands from pipeline by @mkoretsky1 in #223
- remove cloud predictions and neural-admixture from ancestry by @mkoretsky1 in #224
- LD flag fix by @mkoretsky1 in #225
- fix nargs by @mkoretsky1 in #226
- fixing ld flag by @mkoretsky1 in #227
- roll back LD pruning to test API errors by @mkoretsky1 in #228
- drop 0 SD SNPs when fitting PCs by @mkoretsky1 in #229
- Model out by @dvitale199 in #230
- add headers to requests for KING download fix by @mkoretsky1 in #231
New Contributors
- @cwarlysolsberg made their first contribution in #212
Full Changelog: v1.3.5...v1.3.6
Contributors
dvitale199, mkoretsky1, and cwarlysolsberg