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Update R to 4.4 #53

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Merged
merged 3 commits into from
Jan 16, 2025
Merged

Update R to 4.4 #53

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4dcdcd4
Remove unnecessary path
jakubno Jan 16, 2025
33ff495
Add changeset
jakubno Jan 16, 2025
31aabd3
Update Dockerfile
jakubno Jan 16, 2025
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5 changes: 5 additions & 0 deletions .changeset/angry-paws-battle.md
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Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
---
'@e2b/code-interpreter-template': patch
---

Update R to 4.4
15 changes: 9 additions & 6 deletions template/Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,8 +1,5 @@
FROM python:3.10.14

ENV JAVA_HOME=/opt/java/openjdk
ENV PATH="${JAVA_HOME}/bin:${PATH}"

RUN DEBIAN_FRONTEND=noninteractive apt-get update && apt-get install -y --no-install-recommends \
build-essential curl git util-linux jq sudo nodejs npm fonts-noto-cjk

Expand All @@ -11,15 +8,19 @@ ENV PIP_DEFAULT_TIMEOUT=100 \
PIP_NO_CACHE_DIR=1 \
JUPYTER_CONFIG_PATH="/root/.jupyter" \
IPYTHON_CONFIG_PATH="/root/.ipython" \
SERVER_PATH="/root/.server"
SERVER_PATH="/root/.server" \
R_VERSION=4.4.2

ENV R_HOME=/opt/R/${R_VERSION} \
JAVA_HOME=/opt/java/openjdk

# Install Jupyter
COPY ./requirements.txt requirements.txt
RUN pip install --no-cache-dir -r requirements.txt && ipython kernel install --name "python3" --user

# R Kernel
RUN apt-get update && apt-get install -y r-base
RUN R -e "install.packages('IRkernel')"
RUN curl -O https://cdn.rstudio.com/r/debian-12/pkgs/r-${R_VERSION}_1_amd64.deb && sudo apt-get update && sudo apt-get install -y ./r-${R_VERSION}_1_amd64.deb && ln -s ${R_HOME}/bin/R /usr/bin/R
RUN R -e "install.packages('IRkernel', repos='https://cloud.r-project.org')"
RUN R -e "IRkernel::installspec(user = FALSE, name = 'r', displayname = 'R')"

# Javascript Kernel
Expand Down Expand Up @@ -63,6 +64,8 @@ COPY startup_scripts/* $IPYTHON_CONFIG_PATH/profile_default/startup


COPY --from=eclipse-temurin:11-jdk $JAVA_HOME $JAVA_HOME
RUN ln -s ${JAVA_HOME}/bin/java /usr/bin/java

# Java Kernel
RUN wget https://github.com/SpencerPark/IJava/releases/download/v1.3.0/ijava-1.3.0.zip && \
unzip ijava-1.3.0.zip && \
Expand Down
2 changes: 0 additions & 2 deletions template/start-up.sh
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Expand Up @@ -29,8 +29,6 @@ function start_jupyter_server() {
/root/.server/.venv/bin/uvicorn main:app --host 0.0.0.0 --port 49999 --workers 1 --no-access-log --no-use-colors
}

export PATH="/opt/java/openjdk/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin"

echo "Starting Code Interpreter server..."
start_jupyter_server &
MATPLOTLIBRC=/root/.config/matplotlib/.matplotlibrc jupyter server --IdentityProvider.token="" >/dev/null 2>&1
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