Attempt to fix code coverage

.github/workflows/build_dependencies.yml

@@ -175,6 +175,7 @@ jobs:
 
     - name: Code Coverage Run
       run: |
+        python -m pip install gcovr
         conan install \
             -o sisl:prerelease=${{ inputs.prerelease }} \
             -o sisl:malloc_impl=${{ inputs.malloc-impl }} \
@@ -183,11 +184,12 @@ jobs:
             --build missing \
             .
         conan build .
+        gcovr --cobertura ./coverage.xml
       if: ${{ inputs.testing == 'True' && inputs.tooling == 'Coverage' }}
 
     - name: Upload coverage reports to Codecov
-      uses: codecov/codecov-action@v4
+      uses: codecov/codecov-action@v5
       with:
-        token: ${{ secrets.CODECOV_TOKEN }}
-        gcov: true
+        files: ./coverage.xml
+        disable_search: true
       if: ${{ inputs.testing == 'True' && inputs.tooling == 'Coverage' }}

conanfile.py

@@ -64,12 +64,17 @@ def build_requirements(self):
         self.test_requires("jungle/cci.20221201")
 
     def requirements(self):
-        self.requires("sisl/[>=12.3.3]@oss/master", transitive_headers=True)
+        self.requires("sisl/[^12.3]@oss/master", transitive_headers=True)
         self.requires("nuraft/2.4.8", transitive_headers=True)
 
     def layout(self):
         self.folders.source = "."
-        self.folders.build = join("build", str(self.settings.build_type))
+        if self.options.get_safe("sanitize"):
+            self.folders.build = join("build", "Sanitized")
+        elif self.options.get_safe("coverage"):
+            self.folders.build = join("build", "Coverage")
+        else:
+            self.folders.build = join("build", str(self.settings.build_type))
         self.folders.generators = join(self.folders.build, "generators")
 
         self.cpp.source.includedirs = ["include"]

gcovr.cfg

@@ -0,0 +1,13 @@
+high-threshold = 80
+medium-threshold = 65
+
+exclude = .*build.*
+exclude = .*flip.*
+exclude = .*generate.*
+exclude = .*tests.*
+
+exclude-lines-by-pattern = .*DEBUG.*
+exclude-lines-by-pattern = .*DBG.*
+exclude-lines-by-pattern = .*LOG.*
+
+gcov-ignore-parse-errors = all