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Pull Request Overview
This pull request adds support for the {lcmm} package, which provides tools for latent class mixed models. The PR implements parameter extraction, p-value calculation, and standard error methods for lcmm model objects.
- Adds comprehensive support for
lcmm,externVar, andexternXmodel classes - Updates documentation and examples to remove dependencies on
factoextrapackage - Includes extensive test coverage with snapshot testing for various model types
Reviewed Changes
Copilot reviewed 12 out of 12 changed files in this pull request and generated no comments.
Show a summary per file
| File | Description |
|---|---|
R/methods_lcmm.R |
Implements core methods for extracting parameters, p-values, and standard errors from lcmm models |
tests/testthat/test-lcmm.R |
Comprehensive test suite with snapshot testing for different lcmm model configurations |
tests/testthat/_snaps/lcmm.md |
Snapshot test expectations for lcmm model outputs |
R/extract_parameters.R |
Updates generic parameter extraction to support Group column merging for lcmm models |
R/ci_generic.R |
Adds Group column support for confidence interval calculations |
NAMESPACE |
Exports new S3 methods for lcmm model classes |
DESCRIPTION |
Adds lcmm as suggested dependency |
| Various documentation files | Updates examples to use conditional checks instead of requiring factoextra |
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Code Review
This pull request adds support for lcmm models, which is a great addition. The changes include new methods for model_parameters, p_value, and standard_error, along with necessary updates to generic functions, documentation, and tests. The code is well-structured, and the formatting improvements in other files enhance readability. I have one suggestion to refactor the new lcmm methods to reduce code duplication, which will improve long-term maintainability.
Fixes #1169