feat: update TES models to v1.1

[athith-g]

Details

Added fields that were added in TES v1.1 to models.py

TES v1.1 changes:

• Proposal: add "backend_parameters" to tesResources
• Added here
• Add in new tesState for preempted state
• Added here
• feat: allow wildcards in output paths
• NOT added. It seems like this is being reverted in Remove path_prefix from TES specification ga4gh/task-execution-schemas#195
• Making file type an optional argument
• Added here
• Changing int64 to int32 for page_size and cpu_count
• Not in models.py
• Adding ignore_error flag
• Added here
• Add CANCELING state to delete cloud resources
• Added here
• Adding streamable flag to tesInput
• Added here
• Adding filtering features to task listing
• Not in models.py

I removed the unnecessary newlines but I'm not sure how to achieve the whitespacing in the existing descriptions.

Summary by Sourcery

Updated TES models to v1.1 by adding new fields and states to support the latest features and configurations as per the TES v1.1 specification.

• New Features:
  • Added 'ignore_error' field to TesExecutor to allow continuation on errors.
  • Made 'type' field in TesInput and TesOutput optional with a default value of 'FILE'.
  • Added 'streamable' flag to TesInput to indicate potential use of streaming interfaces.
  • Introduced 'backend_parameters' and 'backend_parameters_strict' fields to TesResources for backend configuration.
  • Added 'PREEMPTED' and 'CANCELING' states to TesState.

[sourcery-ai]

Reviewer's Guide by Sourcery

This pull request updates the TES models to version 1.1 by adding new fields and modifying existing ones in models.py. The changes include adding new fields such as ignore_error, streamable, backend_parameters, and backend_parameters_strict, making the type field optional in TesInput and TesOutput, and adding new states PREEMPTED and CANCELING to TesState.

File-Level Changes

Files	Changes
pro_tes/ga4gh/tes/models.py	Updated TES models to version 1.1 by adding new fields and modifying existing ones to align with the latest TES schema changes.

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[sourcery-ai]

Hey @athith-g - I've reviewed your changes and they look great!

Here's what I looked at during the review

• 🟡 General issues: 4 issues found
• 🟢 Security: all looks good
• 🟢 Testing: all looks good
• 🟢 Complexity: all looks good
• 🟢 Documentation: all looks good

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[uniqueg]

Looks good to me. However, the one open Sourcery AI comment looks reasonable - although I have no clue if their suggested change works. Maybe you can try it out and either replace or comment on why it didn't work

[uniqueg]

Also - tests fail...

[athith-g]

I think the rest of the linting and integration tests will pass once #178 is merged.

[uniqueg]

LGTM, @athith-g - I think you can merge :)