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@bedroesb This seems to be working, but you should probably have a look. |
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This indeed fixes it! Thanks
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…ent identifiers (#1597) * Update tool_and_resource_list.yml Adding ROR as a resource. * Update how_to_contribute.md Added recommendation to look into ROR * Update jekyll.yml (#1599) (#1600) * Update identifiers.md minor fixes in grammar, typos, style * Update identifiers.md Adding ROR, ORCID, and OFR. (ORCID and OFR will need to be added in the table of resources as well). * Update tool_and_resource_list.yml Adding ORCID and OFR to the list * Update tool_and_resource_list.yml * Update pages/contribute/how_to_contribute.md Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com>
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* ETT version update (#1516) * version update * less css needed * patch * update scroll to top button * make snakecase (#1519) * Implementing suggested edits on ArrayExpress and BioStudies (from EBI) (#1521) * Update tool_and_resource_list.yml * Update dm_coordination.md Implemented point 3 in #1520 + minor grammar/style fixes. * Update microbial_biotechnology.md Point 4 of #1520 + minor style/grammar fixes * Update dm_coordination.md * Update dm_coordination.md spelling (US to UK) * Automatic tool/resource-list update (#1522) * Update tool/resource_list.yaml * Better description for IDSM --------- Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Update (#1523) * Update tool_and_resource_list.yml (#1525) Improved title and descriptions os some metadata standards * Update tool/resource_list.yaml (#1531) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Move Martin as past editorial member (#1535) * add martin to past editorial members * no codeowner anymore * Update tool/resource_list.yaml (#1538) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Refactor of contribute pages (#1437) * Update google_doc_way.md improve readability and clarity * improve readibility and clarity * Improve readibility and clarity * Simplify how to contribute page * Create ways_to_contribute.md * Update contribute navigation * correct typos * correct typos * correct typos * correct typos * correct typos and remove toc * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/editors_checklist.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/google_doc_way.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/github_way.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/how_to_contribute.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/how_to_contribute.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/how_to_contribute.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/editors_checklist.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/github_way.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/google_doc_way.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/google_doc_way.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * start with ways of contributing tiles * some general improvements * relative url * Update pages/contribute/how_to_contribute.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Improve boxes * shorter sentence * text improvement * apply suggestion from Federico * Update contribute.yml * implement feedback * add Xenia * incorporate feedback * using MD * some minor improvements * strongly suggesting the ORCID * shorter --------- Co-authored-by: Xenia Perez Sitja <62298255+sitjart@users.noreply.github.com> Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update tool/resource_list.yaml (#1539) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update news.yml (#1540) * Update news.yml * Update affilations of Marina and Pinar (#1537) * Update affilation of Marina * Update Pinar's affilation * improved contributors page * Martin is not an editor anymore * Add page on data discoverability (#1517) * Create data_discoverability.md * Update data_discoverability.md * Update tool_and_resource_list.yml * Add files via upload * Add content to data discoverability page * Update data_discoverability.md * Add tools to the tools table * Update tool_and_resource_list.yml * Add new tools in the text * improve size of pic + part of list * add to sidebar * typo * Add Aina to contributors * Update pages/your_tasks/data_discoverability.md Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Add related pages * Update data_discoverability.md replaced 'like' with 'such as' * Update data_discoverability.md Small updates in style and spelling * Add changes based on Nazeefa's comments * Update text based on Nazeefa's comments * Changes based on Nazeefa's comments * add news item * capital in title * adding acronym to tool snippet * no task page linkage * Remove B4OMOP documentation * Update links --------- Co-authored-by: bedroesb <bert.droesbeke@vib.be> Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> Co-authored-by: Nazeeefa <fatima.nazeefa@gmail.com> Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update tool/resource_list.yaml (#1544) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update human_pathogen_genomics.md (#1526) * Update human_pathogen_genomics.md * Improving the page style. * Adding tools with the right syntax * start adding tools (#1527) * Update tool_and_resource_list.yml Adding missing FAIRsharing ID to an ontology * Update tool_and_resource_list.yml Adding the Genomic Epidemiology Ontology (GenEpiO) to the table of resources * Update human_pathogen_genomics.md Genepio moved to tool syntax * Update human_pathogen_genomics.md general style-related improvements * Update tool_and_resource_list.yml Adding the Phenotypic QualiTy Ontology (PATO) to the table of resources * Update tool_and_resource_list.yml Adding Chemical Entities of Biological Interest (ChEBI) to the table of resources. * Update tool_and_resource_list.yml Adding UBER anatomy ONtology (UBERON) to the table of resources * Update human_pathogen_genomics.md Tools syntax for various ontologies. * Update human_pathogen_genomics.md Changing id for bio.tools to match the table * Update human_pathogen_genomics.md Removing "tool" syntax for projects and organisations. * Update tool_and_resource_list.yml Removing organisations and projects from the table of resources. * Update human_pathogen_genomics.md Minor style improvements * Update CONTRIBUTORS.yaml Adding missing author to the list of contributors (permission obtained via private communications with the author) * Update CONTRIBUTORS.yaml Improved affiliation of author (now matches main label on ROR) * Adding bibliography for the human pathogen genomics domain page * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update human_pathogen_genomics.md * Added news item of revamped human pathogen page --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update tool/resource_list.yaml (#1551) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update tool_and_resource_list.yml (#1552) Fixing wrong FAIRsharing ID for a resource (which currently brings up a 404) * Update tool_resource_update.md (#1554) Very minor style/grammar fixes * Update tool_and_resource_list.yml (#1555) Changing URL to the GitHub page instead of having a duplicate link to bio.tools. The GitHub page URL is taken from the bio.tool entry https://bio.tools/plant-3d * fix spelling (#1556) * Update tool/resource_list.yaml (#1557) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * enable affiliation filtering * Automatic tool/resource-list update (#1560) * Update tool/resource_list.yaml * Update tool_and_resource_list.yml --------- Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Update Portugal resources page (#1561) * Update metadata_management.md (#1565) * Update metadata_management.md added wikipedia page on minimum information standards * Update metadata_management.md * Update tool_and_resource_list.yml (#1567) added wiki page on min info standards * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Improve machine actionability page (#1566) * Better intro * Update machine_actionability.md * ELN additions (#1562) * Add eLabFTW and ELN-finder * Update tool_and_resource_list.yml syntax fix for TeSS query on the resource. (ref. https://rdmkit.elixir-europe.org/tool_resource_update#the-main-yaml-file) * Grammar fixes Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Fix typo the in ELN Finder's description --------- Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Fix links (#1569) * start setting up lychee * 2 link fixes * add action * add link checker * Delete .github/workflows/link-checker.yml * Delete .lycheeignore * draft of data workflow diagram task (#1528) * draft of data workflow diagram task * add sidebar and news item * addressing comments of #1528 * resolving comments from Nazeefa * fixing name of creating data workflow page in different places * fixing name of page in news --------- Co-authored-by: bedroesb <bert.droesbeke@vib.be> * fix url * order sidebar * add tools to toolstable * betetr description * add 2 licensed packages * typos * Create link-check.yml (#1571) * Create link-check.yml * Update .github/workflows/link-check.yml Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Update link-check.yml * Update link-check.yml * Update link-check.yml * Update link-check.yml --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * no token * bring back token * personal github token * Mmp2 (#1572) * Create link-check.yml * Update .github/workflows/link-check.yml Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Update link-check.yml * Update link-check.yml * Update link-check.yml * Update link-check.yml * marine_metagenomics_assembly.md * Update no_resources.md * tool_and_resource_list.yml --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * fix version + exclude github (#1573) * Update tool/resource_list.yaml (#1576) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * lychee-action 2.1.0 * correct version syntax lychee * lychee version format (#1575) * Change title to Creating a data workflow diagram (#1574) * Creating a data workflow diagram * some small changes * change to data-flow * space * second space * Link update no_resources (#1577) * Link update no_resources * Update pages/national_resources/no_resources.md * Update pages/national_resources/no_resources.md * Update no_resources.md (#1578) Fixing broken link + minor grammar/style changes * Add IDTk in the corresponding pages (#1559) * Add IDTk in the corresponding pages Add IDTk link in: - Human pathogen data - COVID-19 Data Portal * Update COVID-19 Data Portal page Update COVID-19 Data Portal page with IDTk link * Update human_pathogen_genomics.md * Update pages/tool_assembly/covid19_data_portal.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update covid19_data_portal.md --------- Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update tool/resource_list.yaml (#1579) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update ES resources page (#1580) Update ES resources page with more information about initiatives and resources that were missing. * Update tool/resource_list.yaml (#1583) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Create a CITATION.cff (#1543) * Add new link to template slides * fix aspect ratio * more spacing * Create CITATION.cff * Update CITATION.cff * Update CITATION.cff * Update CITATION.cff * Update CITATION.cff Co-authored-by: Vilem Ded <51602017+vildead@users.noreply.github.com> * Update CITATION.cff Co-authored-by: Vilem Ded <51602017+vildead@users.noreply.github.com> * Update CITATION.cff Co-authored-by: Vilem Ded <51602017+vildead@users.noreply.github.com> * Update CITATION.cff Co-authored-by: Vilem Ded <51602017+vildead@users.noreply.github.com> * update about * attempt to fix * attempt without author * add back ELIXIR * Update CITATION.cff * Update about.md --------- Co-authored-by: Vilem Ded <51602017+vildead@users.noreply.github.com> * Update ee_resources.md (#1582) * removed redcap Estonia (#1586) * Upgrading to ETT V4.0.0 (#1581) * update to latest version * homepage sizing * consistent search * Replacing outdate form of FAIRsharing IDs (#1587) * Replacing outdate form of FAIRsharing IDs * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml These both refer to https://fairsharing.org/3527. I think we want to use these 4 digits only to refer to FAIRsharing collections. * Update tool_and_resource_list.yml Duplicate, it was bringing to the same entry, not to a collection * Update tool_and_resource_list.yml --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Automatic tool/resource-list update (#1591) * Update tool/resource_list.yaml * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml --------- Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Improve the concept of "resources" in the RDMkit (#1532) * start improving resources * betetr box * new variations * describing what a tool or resource is in the RDMkit * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update tool_resource_update.md * Update tool_resource_update.md (#1590) updates on documentation of FAIRsharing IDs * Update tool_resource_update.md * update icon * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> --------- Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update tool/resource_list.yaml (#1596) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update jekyll.yml (#1599) * Update tool/resource_list.yaml (#1601) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update built dependencies * lock versions * Update tool/resource_list.yaml (#1602) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update FWO logo as funder (#1603) * update FWO logo * bigger logo * Licensing Statement (#1594) * Update about.md updated statement on licensing * Update about.md * Standardisation of affiliations and other reccomendations for persistent identifiers (#1597) * Update tool_and_resource_list.yml Adding ROR as a resource. * Update how_to_contribute.md Added recommendation to look into ROR * Update jekyll.yml (#1599) (#1600) * Update identifiers.md minor fixes in grammar, typos, style * Update identifiers.md Adding ROR, ORCID, and OFR. (ORCID and OFR will need to be added in the table of resources as well). * Update tool_and_resource_list.yml Adding ORCID and OFR to the list * Update tool_and_resource_list.yml * Update pages/contribute/how_to_contribute.md Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Updating TSD Tools Assembly page (#1606) * Update tsd_assembly.md Updated "What can you use the TSD data management tools assembly for?" with DSW link and minor fixes in text. * Update tsd_assembly.md * Update about.md updated statement on licensing * Update pages/tool_assembly/tsd_assembly.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/tool_assembly/tsd_assembly.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update tsd_assembly.md Updated "What is the Norwegian TSD Data Management Tools Assembly?" and "Who can use the TSD data management tools assembly?" sections. * Update tsd_assembly.md Updated training links, and first two sections of the pages. * Update about.md * Update pages/tool_assembly/tsd_assembly.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/tool_assembly/tsd_assembly.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> --------- Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update gr_resources.md (#1568) * Update gr_resources.md First test for adding content in the page * Update gr_resources.md * Update gr_resources.md Edits and one additional tool "ARGOS" * Update gr_resources.md Removed twitter account mention * fix build * Update gr_resources.md Followed reviewers latest suggestions * Update gr_resources.md * Update gr_resources.md Added contributors and coordinators * Update gr_resources.md Added argos id * add greece to sidebar * add news article * Update CONTRIBUTORS.yaml Added Eleni, Thanasis and Alexandros as contributors * Update gr_resources.md Added Funders, Policies and one additional national resource. * Update gr_resources.md added tool assembly in related paged of the Greek covid-19 portal * Update gr_resources.md rephrased hypatia description * Update gr_resources.md elixir greece titles * Update gr_resources.md Removed the DMP submission requirement from HFRI * Update gr_resources.md Added 2 training Zenodo inputs * Update gr_resources.md GDI updates, Zenodo training edits * Update gr_resources.md HFRI DMP requirement clarification and minor zenodo publication edit. * Update gr_resources.md Added related pages to HYPATIA and GDI * update date * fix url * Update gr_resources.md Corrected the related pages categories and ids in hypatia and gdi * Update gr_resources.md * some formatting * Update gr_resources.md Fixed GDI link to hyperlink * Update news.yml fixed news description * Update news.yml --------- Co-authored-by: bedroesb <bert.droesbeke@vib.be> Co-authored-by: Bert Droesbeke <bertdroesbeke@hotmail.com> Co-authored-by: Nazeeefa <fatima.nazeefa@gmail.com> * Update editorial board members (#1609) * Update CODEOWNERS Removing Laura from CODEOWNERS * Taking out Martin specific lines * Update editorial_board.md Removing Laura from the carousel, small grammar/style fixes. * Update editorial_board.md Adding Laura to the list of former members of the editorial board. * Update CONTRIBUTORS.yaml --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Update tool/resource_list.yaml (#1613) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * add domain placeholder (#1619) * Update plant_sciences.md (#1608) Punctuation and style improvement, tools syntax for EVA * Automatic tool/resource-list update (#1621) * Update tool/resource_list.yaml * Update tool_and_resource_list.yml --------- Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Fix url to VIB institute (#1615) * add vib * Update affiliations.yaml * Update data_publication.md (#1611) * Update data_publication.md include paragraph about datasets accession numbers in pre-prints * Update data_publication.md added space * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update data_publication.md * Update data_publication.md add contributors * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> --------- Co-authored-by: Diana Pilvar <125961725+diana-pilvar@users.noreply.github.com> Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update news.yml (#1623) * Update news.yml add news * adding page + link to paragraph --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Update CODEOWNERS (#1610) Redistributing roles * Removed acronyms from headings in Portugal National Resources (#1607) * Removed acronyms from headings in Portugal National Resources * Update pt_resources.md fixed typos in "Institutional policies on research data in Portugal" * Changed Portuguese Research Data Management Forum title * Changed INCD to RNCA INCD recently rebranded to RNCA. For now, they're keeping the incd.pt domain, so keeping that. --------- Co-authored-by: Nazeeefa <fatima.nazeefa@gmail.com> * Update bioimaging_data.md (#1627) * Update bioimaging_data.md * Update bioimaging_data.md * Update tool/resource_list.yaml (#1629) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update CONTRIBUTORS.yaml (#1631) * Update CONTRIBUTORS.yaml Added contributors for the Cancer DM domain page * Update CONTRIBUTORS.yaml Corrected errors to the contributor information added * Update CONTRIBUTORS.yaml deleted unwanted space * Update CONTRIBUTORS.yaml Corrected an author listed twice (Fotis) * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml made corrections to the tools and resources added from Cancer DM page * Update tool_and_resource_list.yml corrections to the T&R for Cancer DM page * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml Removing duplicate * Update tool_and_resource_list.yml Fixing misclick * Update tool_and_resource_list.yml Momentarily removed item that does not seem to be parsed * Update tool_and_resource_list.yml Bringing back element (there was a copy/paste artefact that revealed itself when pasted in a plain text editor) * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml swap test * Update tool_and_resource_list.yml ids should be lowercase * Update tool_and_resource_list.yml minor style/grammar fixes --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> Co-authored-by: Xenia Perez Sitja <62298255+sitjart@users.noreply.github.com> Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> Co-authored-by: Laura Portell Silva <74184187+lauportell@users.noreply.github.com> Co-authored-by: bedroesb <bert.droesbeke@vib.be> Co-authored-by: Nazeeefa <fatima.nazeefa@gmail.com> Co-authored-by: Justin Clark-Casey <justinccdev@gmail.com> Co-authored-by: Gil Poiares-Oliveira <gpo@biodata.pt> Co-authored-by: Diana Pilvar <125961725+diana-pilvar@users.noreply.github.com> Co-authored-by: Vilem Ded <51602017+vildead@users.noreply.github.com> Co-authored-by: Korbinian Bösl <korbinian.bosl@uib.no> Co-authored-by: Eleni Adamidi <eleni.adamidi@athenarc.gr> Co-authored-by: Bert Droesbeke <bertdroesbeke@hotmail.com> Co-authored-by: floradanna <51486716+floradanna@users.noreply.github.com>
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* Create cancer_data_management.md * Update cancer_data_management.md * Update cancer_data_management.md * Update tool_and_resource_list.yml (#1633) * ETT version update (#1516) * version update * less css needed * patch * update scroll to top button * make snakecase (#1519) * Implementing suggested edits on ArrayExpress and BioStudies (from EBI) (#1521) * Update tool_and_resource_list.yml * Update dm_coordination.md Implemented point 3 in #1520 + minor grammar/style fixes. * Update microbial_biotechnology.md Point 4 of #1520 + minor style/grammar fixes * Update dm_coordination.md * Update dm_coordination.md spelling (US to UK) * Automatic tool/resource-list update (#1522) * Update tool/resource_list.yaml * Better description for IDSM --------- Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Update (#1523) * Update tool_and_resource_list.yml (#1525) Improved title and descriptions os some metadata standards * Update tool/resource_list.yaml (#1531) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Move Martin as past editorial member (#1535) * add martin to past editorial members * no codeowner anymore * Update tool/resource_list.yaml (#1538) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Refactor of contribute pages (#1437) * Update google_doc_way.md improve readability and clarity * improve readibility and clarity * Improve readibility and clarity * Simplify how to contribute page * Create ways_to_contribute.md * Update contribute navigation * correct typos * correct typos * correct typos * correct typos * correct typos and remove toc * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/editors_checklist.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/google_doc_way.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/github_way.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/how_to_contribute.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/how_to_contribute.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/how_to_contribute.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/editors_checklist.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/github_way.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/google_doc_way.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/google_doc_way.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * start with ways of contributing tiles * some general improvements * relative url * Update pages/contribute/how_to_contribute.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Improve boxes * shorter sentence * text improvement * apply suggestion from Federico * Update contribute.yml * implement feedback * add Xenia * incorporate feedback * using MD * some minor improvements * strongly suggesting the ORCID * shorter --------- Co-authored-by: Xenia Perez Sitja <62298255+sitjart@users.noreply.github.com> Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update tool/resource_list.yaml (#1539) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update news.yml (#1540) * Update news.yml * Update affilations of Marina and Pinar (#1537) * Update affilation of Marina * Update Pinar's affilation * improved contributors page * Martin is not an editor anymore * Add page on data discoverability (#1517) * Create data_discoverability.md * Update data_discoverability.md * Update tool_and_resource_list.yml * Add files via upload * Add content to data discoverability page * Update data_discoverability.md * Add tools to the tools table * Update tool_and_resource_list.yml * Add new tools in the text * improve size of pic + part of list * add to sidebar * typo * Add Aina to contributors * Update pages/your_tasks/data_discoverability.md Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Add related pages * Update data_discoverability.md replaced 'like' with 'such as' * Update data_discoverability.md Small updates in style and spelling * Add changes based on Nazeefa's comments * Update text based on Nazeefa's comments * Changes based on Nazeefa's comments * add news item * capital in title * adding acronym to tool snippet * no task page linkage * Remove B4OMOP documentation * Update links --------- Co-authored-by: bedroesb <bert.droesbeke@vib.be> Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> Co-authored-by: Nazeeefa <fatima.nazeefa@gmail.com> Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update tool/resource_list.yaml (#1544) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update human_pathogen_genomics.md (#1526) * Update human_pathogen_genomics.md * Improving the page style. * Adding tools with the right syntax * start adding tools (#1527) * Update tool_and_resource_list.yml Adding missing FAIRsharing ID to an ontology * Update tool_and_resource_list.yml Adding the Genomic Epidemiology Ontology (GenEpiO) to the table of resources * Update human_pathogen_genomics.md Genepio moved to tool syntax * Update human_pathogen_genomics.md general style-related improvements * Update tool_and_resource_list.yml Adding the Phenotypic QualiTy Ontology (PATO) to the table of resources * Update tool_and_resource_list.yml Adding Chemical Entities of Biological Interest (ChEBI) to the table of resources. * Update tool_and_resource_list.yml Adding UBER anatomy ONtology (UBERON) to the table of resources * Update human_pathogen_genomics.md Tools syntax for various ontologies. * Update human_pathogen_genomics.md Changing id for bio.tools to match the table * Update human_pathogen_genomics.md Removing "tool" syntax for projects and organisations. * Update tool_and_resource_list.yml Removing organisations and projects from the table of resources. * Update human_pathogen_genomics.md Minor style improvements * Update CONTRIBUTORS.yaml Adding missing author to the list of contributors (permission obtained via private communications with the author) * Update CONTRIBUTORS.yaml Improved affiliation of author (now matches main label on ROR) * Adding bibliography for the human pathogen genomics domain page * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_domain/human_pathogen_genomics.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update human_pathogen_genomics.md * Added news item of revamped human pathogen page --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update tool/resource_list.yaml (#1551) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update tool_and_resource_list.yml (#1552) Fixing wrong FAIRsharing ID for a resource (which currently brings up a 404) * Update tool_resource_update.md (#1554) Very minor style/grammar fixes * Update tool_and_resource_list.yml (#1555) Changing URL to the GitHub page instead of having a duplicate link to bio.tools. The GitHub page URL is taken from the bio.tool entry https://bio.tools/plant-3d * fix spelling (#1556) * Update tool/resource_list.yaml (#1557) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * enable affiliation filtering * Automatic tool/resource-list update (#1560) * Update tool/resource_list.yaml * Update tool_and_resource_list.yml --------- Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Update Portugal resources page (#1561) * Update metadata_management.md (#1565) * Update metadata_management.md added wikipedia page on minimum information standards * Update metadata_management.md * Update tool_and_resource_list.yml (#1567) added wiki page on min info standards * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Improve machine actionability page (#1566) * Better intro * Update machine_actionability.md * ELN additions (#1562) * Add eLabFTW and ELN-finder * Update tool_and_resource_list.yml syntax fix for TeSS query on the resource. (ref. https://rdmkit.elixir-europe.org/tool_resource_update#the-main-yaml-file) * Grammar fixes Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Fix typo the in ELN Finder's description --------- Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Fix links (#1569) * start setting up lychee * 2 link fixes * add action * add link checker * Delete .github/workflows/link-checker.yml * Delete .lycheeignore * draft of data workflow diagram task (#1528) * draft of data workflow diagram task * add sidebar and news item * addressing comments of #1528 * resolving comments from Nazeefa * fixing name of creating data workflow page in different places * fixing name of page in news --------- Co-authored-by: bedroesb <bert.droesbeke@vib.be> * fix url * order sidebar * add tools to toolstable * betetr description * add 2 licensed packages * typos * Create link-check.yml (#1571) * Create link-check.yml * Update .github/workflows/link-check.yml Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Update link-check.yml * Update link-check.yml * Update link-check.yml * Update link-check.yml --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * no token * bring back token * personal github token * Mmp2 (#1572) * Create link-check.yml * Update .github/workflows/link-check.yml Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Update link-check.yml * Update link-check.yml * Update link-check.yml * Update link-check.yml * marine_metagenomics_assembly.md * Update no_resources.md * tool_and_resource_list.yml --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * fix version + exclude github (#1573) * Update tool/resource_list.yaml (#1576) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * lychee-action 2.1.0 * correct version syntax lychee * lychee version format (#1575) * Change title to Creating a data workflow diagram (#1574) * Creating a data workflow diagram * some small changes * change to data-flow * space * second space * Link update no_resources (#1577) * Link update no_resources * Update pages/national_resources/no_resources.md * Update pages/national_resources/no_resources.md * Update no_resources.md (#1578) Fixing broken link + minor grammar/style changes * Add IDTk in the corresponding pages (#1559) * Add IDTk in the corresponding pages Add IDTk link in: - Human pathogen data - COVID-19 Data Portal * Update COVID-19 Data Portal page Update COVID-19 Data Portal page with IDTk link * Update human_pathogen_genomics.md * Update pages/tool_assembly/covid19_data_portal.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update covid19_data_portal.md --------- Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update tool/resource_list.yaml (#1579) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update ES resources page (#1580) Update ES resources page with more information about initiatives and resources that were missing. * Update tool/resource_list.yaml (#1583) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Create a CITATION.cff (#1543) * Add new link to template slides * fix aspect ratio * more spacing * Create CITATION.cff * Update CITATION.cff * Update CITATION.cff * Update CITATION.cff * Update CITATION.cff Co-authored-by: Vilem Ded <51602017+vildead@users.noreply.github.com> * Update CITATION.cff Co-authored-by: Vilem Ded <51602017+vildead@users.noreply.github.com> * Update CITATION.cff Co-authored-by: Vilem Ded <51602017+vildead@users.noreply.github.com> * Update CITATION.cff Co-authored-by: Vilem Ded <51602017+vildead@users.noreply.github.com> * update about * attempt to fix * attempt without author * add back ELIXIR * Update CITATION.cff * Update about.md --------- Co-authored-by: Vilem Ded <51602017+vildead@users.noreply.github.com> * Update ee_resources.md (#1582) * removed redcap Estonia (#1586) * Upgrading to ETT V4.0.0 (#1581) * update to latest version * homepage sizing * consistent search * Replacing outdate form of FAIRsharing IDs (#1587) * Replacing outdate form of FAIRsharing IDs * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml These both refer to https://fairsharing.org/3527. I think we want to use these 4 digits only to refer to FAIRsharing collections. * Update tool_and_resource_list.yml Duplicate, it was bringing to the same entry, not to a collection * Update tool_and_resource_list.yml --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Automatic tool/resource-list update (#1591) * Update tool/resource_list.yaml * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml --------- Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Improve the concept of "resources" in the RDMkit (#1532) * start improving resources * betetr box * new variations * describing what a tool or resource is in the RDMkit * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update tool_resource_update.md * Update tool_resource_update.md (#1590) updates on documentation of FAIRsharing IDs * Update tool_resource_update.md * update icon * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/contribute/tool_resource_update.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> --------- Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update tool/resource_list.yaml (#1596) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update jekyll.yml (#1599) * Update tool/resource_list.yaml (#1601) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update built dependencies * lock versions * Update tool/resource_list.yaml (#1602) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update FWO logo as funder (#1603) * update FWO logo * bigger logo * Licensing Statement (#1594) * Update about.md updated statement on licensing * Update about.md * Standardisation of affiliations and other reccomendations for persistent identifiers (#1597) * Update tool_and_resource_list.yml Adding ROR as a resource. * Update how_to_contribute.md Added recommendation to look into ROR * Update jekyll.yml (#1599) (#1600) * Update identifiers.md minor fixes in grammar, typos, style * Update identifiers.md Adding ROR, ORCID, and OFR. (ORCID and OFR will need to be added in the table of resources as well). * Update tool_and_resource_list.yml Adding ORCID and OFR to the list * Update tool_and_resource_list.yml * Update pages/contribute/how_to_contribute.md Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Updating TSD Tools Assembly page (#1606) * Update tsd_assembly.md Updated "What can you use the TSD data management tools assembly for?" with DSW link and minor fixes in text. * Update tsd_assembly.md * Update about.md updated statement on licensing * Update pages/tool_assembly/tsd_assembly.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/tool_assembly/tsd_assembly.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update tsd_assembly.md Updated "What is the Norwegian TSD Data Management Tools Assembly?" and "Who can use the TSD data management tools assembly?" sections. * Update tsd_assembly.md Updated training links, and first two sections of the pages. * Update about.md * Update pages/tool_assembly/tsd_assembly.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/tool_assembly/tsd_assembly.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> --------- Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update gr_resources.md (#1568) * Update gr_resources.md First test for adding content in the page * Update gr_resources.md * Update gr_resources.md Edits and one additional tool "ARGOS" * Update gr_resources.md Removed twitter account mention * fix build * Update gr_resources.md Followed reviewers latest suggestions * Update gr_resources.md * Update gr_resources.md Added contributors and coordinators * Update gr_resources.md Added argos id * add greece to sidebar * add news article * Update CONTRIBUTORS.yaml Added Eleni, Thanasis and Alexandros as contributors * Update gr_resources.md Added Funders, Policies and one additional national resource. * Update gr_resources.md added tool assembly in related paged of the Greek covid-19 portal * Update gr_resources.md rephrased hypatia description * Update gr_resources.md elixir greece titles * Update gr_resources.md Removed the DMP submission requirement from HFRI * Update gr_resources.md Added 2 training Zenodo inputs * Update gr_resources.md GDI updates, Zenodo training edits * Update gr_resources.md HFRI DMP requirement clarification and minor zenodo publication edit. * Update gr_resources.md Added related pages to HYPATIA and GDI * update date * fix url * Update gr_resources.md Corrected the related pages categories and ids in hypatia and gdi * Update gr_resources.md * some formatting * Update gr_resources.md Fixed GDI link to hyperlink * Update news.yml fixed news description * Update news.yml --------- Co-authored-by: bedroesb <bert.droesbeke@vib.be> Co-authored-by: Bert Droesbeke <bertdroesbeke@hotmail.com> Co-authored-by: Nazeeefa <fatima.nazeefa@gmail.com> * Update editorial board members (#1609) * Update CODEOWNERS Removing Laura from CODEOWNERS * Taking out Martin specific lines * Update editorial_board.md Removing Laura from the carousel, small grammar/style fixes. * Update editorial_board.md Adding Laura to the list of former members of the editorial board. * Update CONTRIBUTORS.yaml --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Update tool/resource_list.yaml (#1613) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * add domain placeholder (#1619) * Update plant_sciences.md (#1608) Punctuation and style improvement, tools syntax for EVA * Automatic tool/resource-list update (#1621) * Update tool/resource_list.yaml * Update tool_and_resource_list.yml --------- Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Fix url to VIB institute (#1615) * add vib * Update affiliations.yaml * Update data_publication.md (#1611) * Update data_publication.md include paragraph about datasets accession numbers in pre-prints * Update data_publication.md added space * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update data_publication.md * Update data_publication.md add contributors * Update pages/your_tasks/data_publication.md Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> --------- Co-authored-by: Diana Pilvar <125961725+diana-pilvar@users.noreply.github.com> Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> * Update news.yml (#1623) * Update news.yml add news * adding page + link to paragraph --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> * Update CODEOWNERS (#1610) Redistributing roles * Removed acronyms from headings in Portugal National Resources (#1607) * Removed acronyms from headings in Portugal National Resources * Update pt_resources.md fixed typos in "Institutional policies on research data in Portugal" * Changed Portuguese Research Data Management Forum title * Changed INCD to RNCA INCD recently rebranded to RNCA. For now, they're keeping the incd.pt domain, so keeping that. --------- Co-authored-by: Nazeeefa <fatima.nazeefa@gmail.com> * Update bioimaging_data.md (#1627) * Update bioimaging_data.md * Update bioimaging_data.md * Update tool/resource_list.yaml (#1629) Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> * Update CONTRIBUTORS.yaml (#1631) * Update CONTRIBUTORS.yaml Added contributors for the Cancer DM domain page * Update CONTRIBUTORS.yaml Corrected errors to the contributor information added * Update CONTRIBUTORS.yaml deleted unwanted space * Update CONTRIBUTORS.yaml Corrected an author listed twice (Fotis) * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml made corrections to the tools and resources added from Cancer DM page * Update tool_and_resource_list.yml corrections to the T&R for Cancer DM page * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml Removing duplicate * Update tool_and_resource_list.yml Fixing misclick * Update tool_and_resource_list.yml Momentarily removed item that does not seem to be parsed * Update tool_and_resource_list.yml Bringing back element (there was a copy/paste artefact that revealed itself when pasted in a plain text editor) * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml * Update tool_and_resource_list.yml swap test * Update tool_and_resource_list.yml ids should be lowercase * Update tool_and_resource_list.yml minor style/grammar fixes --------- Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> Co-authored-by: Xenia Perez Sitja <62298255+sitjart@users.noreply.github.com> Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> Co-authored-by: Laura Portell Silva <74184187+lauportell@users.noreply.github.com> Co-authored-by: bedroesb <bert.droesbeke@vib.be> Co-authored-by: Nazeeefa <fatima.nazeefa@gmail.com> Co-authored-by: Justin Clark-Casey <justinccdev@gmail.com> Co-authored-by: Gil Poiares-Oliveira <gpo@biodata.pt> Co-authored-by: Diana Pilvar <125961725+diana-pilvar@users.noreply.github.com> Co-authored-by: Vilem Ded <51602017+vildead@users.noreply.github.com> Co-authored-by: Korbinian Bösl <korbinian.bosl@uib.no> Co-authored-by: Eleni Adamidi <eleni.adamidi@athenarc.gr> Co-authored-by: Bert Droesbeke <bertdroesbeke@hotmail.com> Co-authored-by: floradanna <51486716+floradanna@users.noreply.github.com> * Cancer DM patient journey stages (#1630) * Update tool_and_resource_list.yml removed some tools which were guidelines and corrected typos * Update cancer_data_management.md added the tool snippets and corrected style, typos. * Update data_management.yml Added the cancer data management page info the side bar * Update cancer_data_management.md * Update cancer_data_management.md style correction * Update cancer_data_management.md corrected tool name * Update cancer_data_management.md corrected tool id * Update cancer_data_management.md corrected tool id * Update cancer_data_management.md corrected typo in tool id * Update pages/your_domain/cancer_data_management.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update _data/sidebars/data_management.yml Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/your_domain/cancer_data_management.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/your_domain/cancer_data_management.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/your_domain/cancer_data_management.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/your_domain/cancer_data_management.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/your_domain/cancer_data_management.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/your_domain/cancer_data_management.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/your_domain/cancer_data_management.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/your_domain/cancer_data_management.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update tool_and_resource_list.yml deleted tools with no-context in the text and corrected misleading names and ids * Update cancer_data_management.md corrected tool snippets * Update cancer_data_management.md corrected typo * Update cancer_data_management.md corrected typos and grammar * Update cancer_data_management.md replaced e.g., with e.g. to follow the British system * shuffle cancer prevention headings * aligned headings * Update pages/your_domain/cancer_data_management.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * Update pages/your_domain/cancer_data_management.md Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> * add news item * rename to cancer data * news update --------- Co-authored-by: Martin Cook <martin.cook@elixir-europe.org> Co-authored-by: Munazah <munazaha@gmail.com> Co-authored-by: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> Co-authored-by: Federico Bianchini <72258479+bianchini88@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bedroesb <bedroesb@users.noreply.github.com> Co-authored-by: Xenia Perez Sitja <62298255+sitjart@users.noreply.github.com> Co-authored-by: Marina Popleteeva <108409595+marikapop@users.noreply.github.com> Co-authored-by: Laura Portell Silva <74184187+lauportell@users.noreply.github.com> Co-authored-by: bedroesb <bert.droesbeke@vib.be> Co-authored-by: Nazeeefa <fatima.nazeefa@gmail.com> Co-authored-by: Justin Clark-Casey <justinccdev@gmail.com> Co-authored-by: Gil Poiares-Oliveira <gpo@biodata.pt> Co-authored-by: Diana Pilvar <125961725+diana-pilvar@users.noreply.github.com> Co-authored-by: Vilem Ded <51602017+vildead@users.noreply.github.com> Co-authored-by: Korbinian Bösl <korbinian.bosl@uib.no> Co-authored-by: Eleni Adamidi <eleni.adamidi@athenarc.gr> Co-authored-by: Bert Droesbeke <bertdroesbeke@hotmail.com> Co-authored-by: floradanna <51486716+floradanna@users.noreply.github.com>
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Closes #1598