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Issue #4: ExactMatchMultiClassDictionaryNER implementation and test #5

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Issue #4: ExactMatchMultiClassDictionaryNER implementation and test #5

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This patch addresses #4

@sujitpal sujitpal mentioned this pull request Oct 28, 2019
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@sujitpal sujitpal mentioned this pull request Oct 29, 2019
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sujitpal added 23 commits October 29, 2019 08:08
@sujitpal
NERDS-4: added a fit() method to ExactMatchMultiClassDictionaryNER
98f8797
@sujitpal
moving the current nerds package to nerds_orig
ce26f2f
@sujitpal
adding ExactMatchMultiClassDictionaryNER entry to __init__.py
aa7b257
@sujitpal
streamlined nerds models and code with anago style data backbone
5f43d9d
@sujitpal
Initial commit for Ensemble NER (maximal hard voting) with weights pl…
fe0de32 
…us test.
@sujitpal
replacing mention of IOB with BIO to reduce confusion.
08c3ef3
@sujitpal
Replaced deprecated references to sklearn.externals.joblib with jobli…
0d352f8 
…b per deprecation warning, added load/save tests to CRF and Dictionary NER models.
@sujitpal
Adding load and save for all NER models to tests.
f12f915
@sujitpal
flatten and unflatten lists with tests
95bd584
@sujitpal
GMB example rewrite with updated API
956c13a
@sujitpal
fix section levels
692c6b9
@sujitpal
also remove zip file
3025e85
@sujitpal
moving artifacts to dedicated docs directory
1885d92
@sujitpal
remove version capping for SpaCy
67171ae
@sujitpal
remove glove embeddings file during cleanup
172ce09
@sujitpal
updating README to describe forked code
39d2c96
@sujitpal
example usage on BioNLP dataset
48cdb3f
@sujitpal
uncommenting commented code
156bf89
@sujitpal
API update (transform -> predict)
7cc402e
@sujitpal
remove NLTK, add allenNLP (for ElmoNER) and transformers
538069a
@sujitpal
spelling fix
1a9dccc
@sujitpal
added utility functions to convert back and forth from tokens-tags to…
e36981f 
… sentence-spans representations.
@sujitpal
cosmetic change: added line before def
fdc13c1
@sujitpal
replace vocab building using LabelEncoder
d3cf616
@sujitpal
Ensemble NER can run fit() and predict() in parallel
26d62a3
@sujitpal
update to n_jobs usage in Ensemble NER
24b3b56
@sujitpal
documentation changed to numpy docstring format.
b6e9e2a
@sujitpal
updated list of changes
9652959
@sujitpal
documentation fix
008ffb9
@sujitpal
integrated FLAIR SequenceTagger (NER) into NERDS.
3539808
@sujitpal
added FLAIR to both examples, updated Ensemble calling (constructor i…
78ae769 
…njection) style.
@sujitpal
documentation fixes
744622e
@sujitpal
documentation fixes
396fd6f
@sujitpal
params.yaml file creation in save().
e0f47c0
@sujitpal
Flair NER additions
c3ba6fb
@sujitpal
added link to blog post on flair based NER
aa96dd4
@sujitpal
updated link to BioNLP shared task
c2751f8
@sujitpal
documentation change
49b8511
@sujitpal
updated link to data
b7bfdc3
@sujitpal
rename tests to reflect intent (fix copy-paste)
9f21095
@sujitpal
add encoding to load_data_and_labels
dff1a70
@sujitpal
initial revision
5d90712
@sujitpal
fix default behavior to pad with padding tag in case of truncated tok…
c47d8ef 
…ens during prediction, with utility method to align for metric computations
@sujitpal
added suppress warnings to all tests, added new utils methods and tests.
2a6cc00
@sujitpal
initial revision for simpletransformer based NER
a94f169
@sujitpal
adding example runs
22caa4c
@sujitpal
uncommenting clean up
35ef8de
@sujitpal
adding classification report for TransformerNER
c9f5578
@sujitpal
updated change list to include TransformerNER
58c556c
@sujitpal
adding TransformerNER blog post link
607bde5
@sujitpal
updated preprocessing logic and marked it experimental
514ac22
@sujitpal
predict does its own batching, more efficient without external batching
951fdc4
@sujitpal
Updated Pipfile based on security vulnerability, removing Pipfile.loc…
366420b 
…k since no longer using.
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@sujitpal