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title: "primerlab plot" description: "CLI reference for the primerlab plot command"

Generate visualizations from primer design results.

Synopsis

primerlab plot <result> [options]

Arguments

Argument Required Description
result Yes Path to result.json file

Options

Option Short Description
--sequence -s Path to sequence file (required)
--type -t Plot type (default: gc-profile)
--theme Color theme: light, dark
--output -o Output path (PNG/SVG)
--window -w Sliding window size (default: 20)

Plot Types

Type Description
gc-profile GC content across amplicon

Examples

Basic GC Profile

primerlab plot result.json --sequence input.fasta

Dark Theme

primerlab plot result.json --sequence input.fasta --theme dark

Custom Window Size

primerlab plot result.json --sequence input.fasta --window 50

Save to File

primerlab plot result.json --sequence input.fasta --output gc_profile.png

Output

  • Interactive plot displayed (if no --output)
  • PNG/SVG file saved (if --output specified)
  • Primer positions highlighted on plot