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Update installation script to download packages if not found

Status: Open.

#35 In erictleung/dada2HPCPipe;

· erictleung opened on Jun 30, 2018

Consolidate scripts to use <code>rslurm</code> R package

discussing

slurm

Status: Open.

#34 In erictleung/dada2HPCPipe;

· erictleung opened on Jun 21, 2018

Create configuration file for user input parameters

enhancement

Status: Open.

#32 In erictleung/dada2HPCPipe;

· erictleung opened on Nov 10, 2017

Make it easy to hand off to phyloseq

enhancement

Status: Open.

#28 In erictleung/dada2HPCPipe;

· erictleung opened on Sep 21, 2017

Add feedback to user in various functions

enhancement

Status: Open.

#26 In erictleung/dada2HPCPipe;

· erictleung opened on Sep 21, 2017

Replace for loop fastqPairedFilter with filterAndTrim

enhancement

Status: Open.

#21 In erictleung/dada2HPCPipe;

· erictleung opened on Sep 19, 2017

Look into using covr for code coverage

ci-automation

Status: Open.

#18 In erictleung/dada2HPCPipe;

· erictleung opened on Sep 6, 2017

Add Makefile to download taxonomic reference data

ci-automation

documentation

Status: Open.

#11 In erictleung/dada2HPCPipe;

· erictleung opened on Aug 22, 2017

Add Travis CI to do unit tests on functions

ci-automation

Status: Open.

#10 In erictleung/dada2HPCPipe;

· erictleung opened on Aug 21, 2017

Document descriptions of data in workspace data

enhancement

Status: Open.

#7 In erictleung/dada2HPCPipe;

· erictleung opened on Aug 20, 2017

Create Make rule to verify data format

ci-automation

Status: Open.

#4 In erictleung/dada2HPCPipe;

· erictleung opened on Aug 10, 2017

Save file of keeping track of changes from workflow

enhancement

Status: Open.

#3 In erictleung/dada2HPCPipe;

· erictleung opened on Aug 8, 2017