Add tests for SQLite and configure CI

[d0rich]

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[Copilot]

Pull Request Overview

This PR adds comprehensive tests for SQLite-backed tables and utilities, enforces a minimum SQLite version at runtime, reorganizes dependencies into groups, and updates the CI workflow.

• Added new unit tests for Semver, embeddings, and all database tables under tests/test_db/
• Introduced a SQLite version check and foreign-key enforcement in DbClient
• Split dependencies into production and dev groups in pyproject.toml and updated GitHub Actions

Reviewed Changes

Copilot reviewed 19 out of 23 changed files in this pull request and generated no comments.

Show a summary per file

File	Description
tests/test_semver.py	Added unit tests for Semver parsing and comparison
tests/test_embeddings.py	Updated logging level and skip logic for embedding tests
tests/test_db_client.py	Removed legacy top-level DB client test
tests/test_db/test_db_client.py	Added DB client extension and version check test
tests/test_db/test_tables/test_test_cases.py	New tests for TestCases table insert/get_or_insert behavior
tests/test_db/test_tables/test_requirements.py	New tests for Requirements table insert scenarios
tests/test_db/test_tables/test_cases_to_annos.py	New tests for CasesToAnnos table insert and count
tests/test_db/test_tables/test_annotations.py	New tests for Annotations table insert/get_or_insert and embeddings
tests/test_db/test_tables/test_annos_to_reqs.py	New tests for AnnosToReqs table insert and count
test2text/utils/semver.py	Implemented Semver class with comparison operators
test2text/db/tables/test_case.py	Added return typing and get_or_insert logic for TestCases table
test2text/db/tables/cases_to_annos.py	Enhanced insert/count and added recreate_table for CasesToAnnos
test2text/db/tables/annotations.py	Added return typing and get_or_insert logic for Annotations table
test2text/db/tables/annos_to_reqs.py	Enhanced insert/count for AnnotationsToRequirements table
test2text/db/client.py	Added SQLite version check and foreign-key pragma enabling
pyproject.toml	Separated dependencies into production/dev groups
index_requirements.py	Switched to get_or_insert for requirements indexing
index_annotations.py	Switched to get_or_insert for annotations and test cases
.github/workflows/test.yaml	Configured CI workflow to install dependencies and run tests

Comments suppressed due to low confidence (4)

.github/workflows/test.yaml:21

• The CI installs only the production group and omits dev dependencies like coverage, which will cause the test step to fail; consider syncing all or including the dev group.

          run: uv sync --no-group production

test2text/db/tables/test_case.py:36

• The else: in get_or_insert is mis-indented relative to its if and will cause a syntax error; align it with the if inserted_id is not None: block.

        else:

test2text/db/tables/annotations.py:31

• Optional is used in the return type but not imported; add from typing import Optional to avoid a NameError.

    def insert(self, summary: str, embedding: list[float] = None) -> Optional[int]:

index_requirements.py:23

• The get_or_insert call likely doesn’t accept positional embedding and external_id arguments in this order; verify its signature and use named parameters or correct ordering.

                db.requirements.get_or_insert(requirement, embedding, external_id)

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