Authors: Dr. Brian Munsky, Michael May, Linda Forero, Luis Aguilera, William Raymond, Zachary R. Fox, Lisa Weber, Kaan Ocal, and Huy D. Vo.
Module 0 (Online) : Getting Started with Basic Scientific Computing in Python.
Date (MST)
Location
Description
Link
May 15-31
Online
Intro to Python: Hello (Python) World, Types, Arithmetic Operations, Iterables, and Containers
May 15-31
Online
Intro to Python: Google colab environment setup and navigation
May 15-31
Online
Intro to Python: importing packages, classes/modules, os navigation, reading files
May 15-31
Online
Intro to Python: Loops, Ranges, Functions, Lambdas, List Comprehension
May 15-31
Online
Intro to Python: Matplotlib visualization
May 15-31
Online
Intro to Python: NumPy and Linear Algebra Review
Module 1 : Single-Cell Optical Microscopy Experiments and Image Processing.
Date (MST)
Location
Description
Link
June 1, 10:15-12:15
TBD
1.1 – Python Review and Basic Image Processing - Will Raymond
Link
June 2, 10:15-12:15
TBD
1.2 – Python Tutorial for Cell Segmentation and smFISH – Dr. Luis Aguilera
Link
June 3, 10:15-12:15
TBD
1.3 – Python Tutorial for Particle Tracking – Dr. Luis Aguilera
Link
Module 2 : Multivariable Statistics and Machine Learning for Single-Cell Data.
Date (MST)
Location
Description
Link
June 6, 10:15-12:15
TBD
2.1 – Python Tutorial for Basic Probability Distributions and Sampling – Dr. Brian Munsky
Link
June 7, 10:15-12:15
TBD
2.2 – Python Tutorial for Supervised Learning – Will Raymond
Link
Module 3 : Stochastic Simulations of Single-Cell Gene Regulatory Processes.
Date (MST)
Location
Description
Link
June 8, 10:15-12:15
TBD
3.1 – Python Tutorial for Stoichiometries and Propensity Functions – Michael May
Link
June 9, 10:15-12:15
TBD
3.2 – Python Tutorial for Stochastic Simulation Algorithm – Joshua Cook
Link
June 10, 10:15-12:15
TBD
3.3 – Python Tutorial for Totally Asymmetric Exclusion Processes – Will Raymond
Link
Module 4 : Master Equation Analyses of Single-Cell Gene Regulatory Processes.
Date (MST)
Location
Description
Link
June 13, 10:15-12:15
TBD
4.1 – Python Tutorial for Finite State Projection Analyses – Michael May
Link
June 14, 10:15-12:15
TBD
4.2 – Python Tutorial for Model Optimization and Data Fitting – Dr. Zachary R Fox
Link
June 15, 10:15-12:15
TBD
4.3 – Python Tutorial for MCMC and Metropolis Hastings Analysis – Dr. Kaan Ocal
Link
