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bbbef65
upgraded to jupyter 2, made myst.yml instead of toc and conf
Oct 2, 2025
b35cd29
removed old .yml files
Oct 2, 2025
9bb112f
moved jupy2 dependencies
Oct 2, 2025
34c48e7
pre release
RemDelaporteMathurin Oct 3, 2025
6362a70
quotes in pip command + dark logo
RemDelaporteMathurin Oct 3, 2025
565b6ab
python command
RemDelaporteMathurin Oct 3, 2025
2e61d17
fixed install of jupyterbook2
RemDelaporteMathurin Oct 3, 2025
c148449
attempt to fix the build
RemDelaporteMathurin Oct 3, 2025
fced6af
post build
RemDelaporteMathurin Oct 3, 2025
8890cba
build and move html
RemDelaporteMathurin Oct 3, 2025
657fc4b
override build
RemDelaporteMathurin Oct 4, 2025
f9f55e6
added hyphen
Oct 6, 2025
7edbec4
overriding build and creating environment with command
Oct 8, 2025
3152e32
added conda init
Oct 8, 2025
19093de
not using conda activate anymore
Oct 8, 2025
3c0836c
added node.js to dependancies
Oct 8, 2025
3be70ad
fixed hyphen?
Oct 8, 2025
03323cb
updated syntax
Oct 8, 2025
cbf2b5a
syntax update
Oct 8, 2025
3d85caa
added html to command line
Oct 8, 2025
96764d2
fixing path location
Oct 8, 2025
cda3f22
added init for jupy book
Oct 8, 2025
db86959
changed init to start
Oct 8, 2025
4d4a3d8
listing folder to see what builds
Oct 8, 2025
f1ce3ad
debugging fix
Oct 8, 2025
8f52c15
bash command
Oct 8, 2025
50d6728
removed markdown text in reactions.ipynb temporarily
Oct 8, 2025
f213379
adding /book to path
Oct 9, 2025
c0fb70c
trying example from jupy2 gh
Oct 9, 2025
5f42702
typo fix
Oct 9, 2025
577b340
added keep-host
Oct 9, 2025
0a57eb3
not creating environment to test if host connects
Oct 9, 2025
85887e5
changing host location
Oct 9, 2025
fc39efb
changing html to site
Oct 9, 2025
35b1fc7
adding back env
Oct 9, 2025
700d407
change host location before running commands
Oct 9, 2025
29c2de8
changed template
Oct 14, 2025
ba867e1
changed binder url
Oct 15, 2025
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48 changes: 0 additions & 48 deletions book/_config.yml

This file was deleted.

39 changes: 0 additions & 39 deletions book/_toc.yml

This file was deleted.

48 changes: 48 additions & 0 deletions book/myst.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,48 @@
version: 1
project:
title: FESTIM tutorial
authors:
- name: The FESTIM community
github: festim-dev/FESTIM-workshop
thebe:
binder:
repo: festim-dev/FESTIM-workshop
provider: github
url: https://mybinder.org
ref: festim2
toc:
- file: intro.md
- title: Getting started
children:
- file: content/applications/task01.ipynb
- title: Meshing
children:
- file: content/meshes/mesh_festim.ipynb
- file: content/meshes/mesh_fenics.ipynb
- file: content/meshes/mesh_gmsh.ipynb
- file: content/meshes/mesh_salome.ipynb
- title: Materials
children:
- file: content/material/material_basics.md
- file: content/material/material_htm.md
- file: content/material/material_advanced.md
- title: Species & Reactions
children:
- file: content/species_reactions/species.ipynb
- file: content/species_reactions/reactions.ipynb
- file: content/species_reactions/surface_reactions.ipynb
- title: Applications
children:
- file: content/applications/task02.ipynb
- file: content/applications/task03.ipynb
- file: content/applications/task04.ipynb
- file: content/applications/task07.ipynb
- file: content/applications/task08.ipynb
- file: content/applications/task06.ipynb
- file: content/applications/task10.ipynb
- file: content/applications/microstructure.md
site:
options:
logo: images/logo_light.png
folders: true
template: book-theme

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Suggested change
template: book-theme
template: "https://github.com/myst-templates/book-theme/archive/de4c1e9c09c6cd12fc529c1f22e8abf8e7f35381.zip"

This should hopefully resolve the ECONNREFUSED error! You should probably revert this after the next JB2 release.

2 changes: 1 addition & 1 deletion environment.yml
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,6 @@ channels:
- conda-forge
- defaults
dependencies:
- jupyter-book
- jupytext # necessary to open MyST files using BinderHub https://jupyterbook.org/en/stable/interactive/launchbuttons.html#launchbuttons-binder
- sphinx-tags
- matplotlib
Expand All @@ -17,6 +16,7 @@ dependencies:
- shapely
- scipy
- pip:
- jupyter-book==2.*
- pyparsing
- h-transport-materials==0.16
- pyvista[all,trame] # trame cannot be installed on conda