Add safety check for masked loading of ROI tables to support ngio masked ROI tables #1436
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| name: CI (pip) | |
| on: | |
| push: | |
| branches: ["main"] | |
| pull_request: | |
| branches: ["main"] | |
| schedule: | |
| - cron: "0 23 * * 2" | |
| workflow_dispatch: | |
| jobs: | |
| tests_core: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, macos-latest] | |
| python-version: ["3.11", "3.12"] | |
| name: "Core, Python ${{ matrix.python-version }}, ${{ matrix.os }}" | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 10 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| persist-credentials: false | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| - name: Install package (without extra) | |
| run: python -m pip install -e . | |
| - name: Install some testing dependencies (hard-coded) | |
| run: python -m pip install pytest devtools jsonschema requests wget pooch | |
| - name: Test core library with pytest | |
| run: python -m pytest tests --ignore tests/tasks --ignore tests/dev --ignore tests/tasks_v2 | |
| tests_tasks: | |
| if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ["3.11", "3.12"] | |
| name: "Tasks, Python ${{ matrix.python-version }}, ${{ matrix.os }}" | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| persist-credentials: false | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| - name: Install package (with fractal-tasks extra) | |
| run: python -m pip install -e .[fractal-tasks] | |
| - name: Install some testing dependencies (hard-coded) | |
| run: python -m pip install pytest devtools jsonschema requests wget pooch | |
| - name: Cache Pooch folder | |
| id: cache-pooch-folder | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/pooch | |
| key: pooch-cache | |
| - name: Test tasks with pytest | |
| run: python -m pytest tests/dev tests/tasks tests/tasks_v2 -s --log-cli-level info |