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@tcompa tcompa commented Jun 24, 2025

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 9 updates, 0 removals

  - Updating certifi (2025.4.26 -> 2025.6.15)
  - Updating urllib3 (2.4.0 -> 2.5.0)
  - Updating scipy (1.15.3 -> 1.16.0)
  - Updating msgpack (1.1.0 -> 1.1.1)
  - Updating multidict (6.4.4 -> 6.5.0)
  - Updating aiohttp (3.12.12 -> 3.12.13)
  - Updating polars (1.30.0 -> 1.31.0)
  - Updating xarray (2025.4.0 -> 2025.6.1)
  - Updating ngio (0.2.9 -> 0.2.10)

Writing lock file

Outdated dependencies before PR:

aiohttp                                            3.12.12           
anndata                                            0.10.9            
app-model                                      (!) 0.3.1             
astropy-iers-data                              (!) 0.2025.6.9.14.9.37
asttokens                                      (!) 2.4.1             
cellpose                                       (!) 2.2.3             
certifi                                            2025.4.26         
eval-type-backport                                 0.1.3             
executing                                      (!) 0.10.0            
fastremap                                      (!) 1.16.1            
filelock                                           3.13.4            
fonttools                                      (!) 4.58.2            
imageio-ffmpeg                                 (!) 0.4.9             
lxml                                               4.9.4             
msgpack                                            1.1.0             
multidict                                          6.4.4             
napari-segment-blobs-and-things-with-membranes (!) 0.3.8             
napari-skimage-regionprops                     (!) 0.8.2             
ngio                                               0.2.9             
numcodecs                                          0.15.1            
numpy                                              2.1.0             
nvidia-cublas-cu12                             (!) 12.6.4.1          
nvidia-cuda-cupti-cu12                         (!) 12.6.80           
nvidia-cuda-nvrtc-cu12                         (!) 12.6.77           
nvidia-cuda-runtime-cu12                       (!) 12.6.77           
nvidia-cudnn-cu12                              (!) 9.5.1.17          
nvidia-cufft-cu12                              (!) 11.3.0.4          
nvidia-cufile-cu12                             (!) 1.11.1.6          
nvidia-curand-cu12                             (!) 10.3.7.77         
nvidia-cusolver-cu12                           (!) 11.7.1.2          
nvidia-cusparse-cu12                           (!) 12.5.4.2          
nvidia-cusparselt-cu12                         (!) 0.6.3             
nvidia-nccl-cu12                               (!) 2.26.2            
nvidia-nvjitlink-cu12                          (!) 12.6.85           
nvidia-nvtx-cu12                               (!) 12.6.77           
polars                                             1.30.0            
pooch                                              1.8.0             
pycodestyle                                    (!) 2.13.0            
pydantic                                           2.8.2             
pydantic-core                                      2.20.1            
pygments                                       (!) 2.19.1            
pytest                                         (!) 7.4.4             
pyzmq                                          (!) 26.4.0            
scipy                                              1.15.3            
stack-data                                     (!) 0.5.1             
stackview                                      (!) 0.8.2             
superqt                                        (!) 0.7.3             
tifffile                                       (!) 2025.6.1          
urllib3                                            2.4.0             
xarray                                             2025.4.0          
zarr                                               2.18.7            

Outdated dependencies after PR:

anndata                                            0.10.9    0.11.4    
app-model                                      (!) 0.3.2     0.4.0     
asttokens                                      (!) 2.4.1     3.0.0     
cellpose                                       (!) 2.2.3     4.0.4     
eval-type-backport                                 0.1.3     0.2.2     
executing                                      (!) 0.10.0    2.2.0     
filelock                                           3.13.4    3.18.0    
imageio-ffmpeg                                 (!) 0.4.9     0.6.0     
lxml                                               4.9.4     5.4.0     
napari-segment-blobs-and-things-with-membranes (!) 0.3.8     0.3.12    
napari-skimage-regionprops                     (!) 0.8.2     0.10.1    
ngio                                               0.2.10    0.3.2     
numcodecs                                          0.15.1    0.16.1    
numpy                                              2.1.0     2.3.1     
nvidia-cublas-cu12                             (!) 12.6.4.1  12.9.1.4  
nvidia-cuda-cupti-cu12                         (!) 12.6.80   12.9.79   
nvidia-cuda-nvrtc-cu12                         (!) 12.6.77   12.9.86   
nvidia-cuda-runtime-cu12                       (!) 12.6.77   12.9.79   
nvidia-cudnn-cu12                              (!) 9.5.1.17  9.10.2.21 
nvidia-cufft-cu12                              (!) 11.3.0.4  11.4.1.4  
nvidia-cufile-cu12                             (!) 1.11.1.6  1.14.1.1  
nvidia-curand-cu12                             (!) 10.3.7.77 10.3.10.19
nvidia-cusolver-cu12                           (!) 11.7.1.2  11.7.5.82 
nvidia-cusparse-cu12                           (!) 12.5.4.2  12.5.10.65
nvidia-cusparselt-cu12                         (!) 0.6.3     0.7.1     
nvidia-nccl-cu12                               (!) 2.26.2    2.27.3    
nvidia-nvjitlink-cu12                          (!) 12.6.85   12.9.86   
nvidia-nvtx-cu12                               (!) 12.6.77   12.9.79   
pooch                                              1.8.0     1.8.2     
pydantic                                           2.8.2     2.11.7    
pydantic-core                                      2.20.1    2.35.1    
pytest                                         (!) 7.4.4     8.4.1     
stack-data                                     (!) 0.5.1     0.6.3     
stackview                                      (!) 0.8.2     0.18.0    
zarr                                               2.18.7    3.0.8     

Note: there may be dependencies in the table above which were not updated as part of this PR.
The reason is they require manual updating due to the way they are pinned.

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This PR does not seem to contain any modification to coverable code.

@tcompa tcompa marked this pull request as ready for review June 24, 2025 09:33
@tcompa tcompa closed this Jun 24, 2025
@tcompa tcompa deleted the poetry-update branch June 24, 2025 09:33
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2 participants