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@tcompa tcompa commented Jul 29, 2025

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 3 updates, 0 removals

  - Updating scipy (1.16.0 -> 1.16.1)
  - Updating aiohttp (3.12.14 -> 3.12.15)
  - Updating ome-zarr-models (0.1.8 -> 0.1.9)

Writing lock file

Outdated dependencies before PR:

aiohttp                                            3.12.14            
anndata                                            0.10.9             
astropy-iers-data                              (!) 0.2025.7.21.0.41.39
asttokens                                      (!) 2.4.1              
cellpose                                       (!) 2.2.3              
comm                                           (!) 0.2.2              
contourpy                                      (!) 1.3.2              
docstring-parser                                   0.16               
eval-type-backport                                 0.1.3              
executing                                      (!) 0.10.0             
fastremap                                      (!) 1.17.1             
filelock                                           3.13.4             
fractal-task-tools                                 0.0.12             
imageio-ffmpeg                                 (!) 0.4.9              
lxml                                               5.4.0              
napari-segment-blobs-and-things-with-membranes (!) 0.3.8              
napari-skimage-regionprops                     (!) 0.8.2              
ngio                                               0.2.10             
numcodecs                                          0.15.1             
numpy                                              2.1.0              
nvidia-cublas-cu12                             (!) 12.6.4.1           
nvidia-cuda-cupti-cu12                         (!) 12.6.80            
nvidia-cuda-nvrtc-cu12                         (!) 12.6.77            
nvidia-cuda-runtime-cu12                       (!) 12.6.77            
nvidia-cudnn-cu12                              (!) 9.5.1.17           
nvidia-cufft-cu12                              (!) 11.3.0.4           
nvidia-cufile-cu12                             (!) 1.11.1.6           
nvidia-curand-cu12                             (!) 10.3.7.77          
nvidia-cusolver-cu12                           (!) 11.7.1.2           
nvidia-cusparse-cu12                           (!) 12.5.4.2           
nvidia-cusparselt-cu12                         (!) 0.6.3              
nvidia-nccl-cu12                               (!) 2.26.2             
nvidia-nvjitlink-cu12                          (!) 12.6.85            
nvidia-nvtx-cu12                               (!) 12.6.77            
ome-zarr-models                                    0.1.8              
pooch                                              1.8.0              
pydantic                                           2.8.2              
pydantic-core                                      2.20.1             
pytest                                         (!) 7.4.4              
rich                                           (!) 14.0.0             
scipy                                              1.16.0             
stack-data                                     (!) 0.5.1              
stackview                                      (!) 0.8.2              
zarr                                               2.18.7             

Outdated dependencies after PR:

anndata                                            0.10.9    0.12.1    
asttokens                                      (!) 2.4.1     3.0.0     
cellpose                                       (!) 2.2.3     4.0.6     
docstring-parser                                   0.16      0.17.0    
eval-type-backport                                 0.1.3     0.2.2     
executing                                      (!) 0.10.0    2.2.0     
filelock                                           3.13.4    3.18.0    
fractal-task-tools                                 0.0.12    0.0.13    
imageio-ffmpeg                                 (!) 0.4.9     0.6.0     
lxml                                               5.4.0     6.0.0     
napari-segment-blobs-and-things-with-membranes (!) 0.3.8     0.3.12    
napari-skimage-regionprops                     (!) 0.8.2     0.10.1    
ngio                                               0.2.10    0.3.4     
numcodecs                                          0.15.1    0.16.1    
numpy                                              2.1.0     2.3.2     
nvidia-cublas-cu12                             (!) 12.6.4.1  12.9.1.4  
nvidia-cuda-cupti-cu12                         (!) 12.6.80   12.9.79   
nvidia-cuda-nvrtc-cu12                         (!) 12.6.77   12.9.86   
nvidia-cuda-runtime-cu12                       (!) 12.6.77   12.9.79   
nvidia-cudnn-cu12                              (!) 9.5.1.17  9.11.0.98 
nvidia-cufft-cu12                              (!) 11.3.0.4  11.4.1.4  
nvidia-cufile-cu12                             (!) 1.11.1.6  1.14.1.1  
nvidia-curand-cu12                             (!) 10.3.7.77 10.3.10.19
nvidia-cusolver-cu12                           (!) 11.7.1.2  11.7.5.82 
nvidia-cusparse-cu12                           (!) 12.5.4.2  12.5.10.65
nvidia-cusparselt-cu12                         (!) 0.6.3     0.7.1     
nvidia-nccl-cu12                               (!) 2.26.2    2.27.6    
nvidia-nvjitlink-cu12                          (!) 12.6.85   12.9.86   
nvidia-nvtx-cu12                               (!) 12.6.77   12.9.79   
pooch                                              1.8.0     1.8.2     
pydantic                                           2.8.2     2.11.7    
pydantic-core                                      2.20.1    2.37.2    
pytest                                         (!) 7.4.4     8.4.1     
stack-data                                     (!) 0.5.1     0.6.3     
stackview                                      (!) 0.8.2     0.18.0    
zarr                                               2.18.7    3.1.0     

Note: there may be dependencies in the table above which were not updated as part of this PR.
The reason is they require manual updating due to the way they are pinned.

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@tcompa tcompa marked this pull request as ready for review July 29, 2025 09:36
@tcompa tcompa merged commit 9a20ad2 into main Jul 29, 2025
15 checks passed
@tcompa tcompa deleted the poetry-update branch July 29, 2025 09:37
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