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@tcompa tcompa commented Sep 30, 2025

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 1 install, 12 updates, 0 removals

  - Updating attrs (25.3.0 -> 25.4.0)
  - Updating certifi (2025.8.3 -> 2025.10.5)
  - Updating markupsafe (3.0.2 -> 3.0.3)
  - Updating pyyaml (6.0.2 -> 6.0.3)
  - Updating pandas (2.3.2 -> 2.3.3)
  - Updating frozenlist (1.7.0 -> 1.8.0)
  - Updating multidict (6.6.4 -> 6.7.0)
  - Updating propcache (0.3.2 -> 0.4.0)
  - Installing polars-runtime-32 (1.34.0)
  - Updating yarl (1.20.1 -> 1.22.0)
  - Updating aiohttp (3.12.15 -> 3.13.0)
  - Updating polars (1.33.1 -> 1.34.0)
  - Updating xarray (2025.9.0 -> 2025.10.0)

Writing lock file

Outdated dependencies before PR:

aiohttp                                            3.12.15            
anndata                                            0.10.9             
anyio                                          (!) 4.10.0             
app-model                                      (!) 0.4.0              
astropy-iers-data                              (!) 0.2025.9.22.0.37.25
asttokens                                      (!) 2.4.1              
attrs                                              25.3.0             
beautifulsoup4                                 (!) 4.13.5             
cellpose                                       (!) 2.2.3              
certifi                                            2025.8.3           
docstring-parser                                   0.16               
docutils                                       (!) 0.21.2             
eval-type-backport                                 0.1.3              
executing                                      (!) 0.10.0             
fastremap                                      (!) 1.17.5             
filelock                                           3.13.4             
fonttools                                      (!) 4.60.0             
fractal-task-tools                                 0.0.12             
frozenlist                                         1.7.0              
imageio-ffmpeg                                 (!) 0.4.9              
ipython                                        (!) 9.5.0              
jupyterlab                                     (!) 4.4.7              
llvmlite                                       (!) 0.45.0             
lxml                                               5.4.0              
markupsafe                                         3.0.2              
multidict                                          6.6.4              
napari                                         (!) 0.6.4              
napari-segment-blobs-and-things-with-membranes (!) 0.3.8              
napari-skimage-regionprops                     (!) 0.8.2              
ngio                                               0.2.12             
notebook                                       (!) 7.4.5              
numba                                          (!) 0.62.0             
numcodecs                                          0.15.1             
numpy                                              2.1.0              
nvidia-cublas-cu12                             (!) 12.8.4.1           
nvidia-cuda-cupti-cu12                         (!) 12.8.90            
nvidia-cuda-nvrtc-cu12                         (!) 12.8.93            
nvidia-cuda-runtime-cu12                       (!) 12.8.90            
nvidia-cudnn-cu12                              (!) 9.10.2.21          
nvidia-cufft-cu12                              (!) 11.3.3.83          
nvidia-cufile-cu12                             (!) 1.13.1.3           
nvidia-curand-cu12                             (!) 10.3.9.90          
nvidia-cusolver-cu12                           (!) 11.7.3.90          
nvidia-cusparse-cu12                           (!) 12.5.8.93          
nvidia-cusparselt-cu12                         (!) 0.7.1              
nvidia-nccl-cu12                               (!) 2.27.3             
nvidia-nvjitlink-cu12                          (!) 12.8.93            
nvidia-nvtx-cu12                               (!) 12.8.90            
ome-zarr-models                                    0.1.10             
pandas                                             2.3.2              
polars                                             1.33.1             
pooch                                              1.8.0              
propcache                                          0.3.2              
psygnal                                        (!) 0.14.1             
pydantic                                           2.8.2              
pydantic-core                                      2.20.1             
pydantic-zarr                                      0.7.0              
pyperclip                                      (!) 1.10.0             
pytest                                         (!) 7.4.4              
python-json-logger                             (!) 3.3.0              
pyyaml                                             6.0.2              
stack-data                                     (!) 0.5.1              
stackview                                      (!) 0.8.2              
tifffile                                       (!) 2025.9.20          
typer                                          (!) 0.19.1             
xarray                                             2025.9.0           
yarl                                               1.20.1             
zarr                                               2.18.7             

Outdated dependencies after PR:

anndata                                            0.10.9    0.12.2    
app-model                                      (!) 0.4.0     0.5.0     
asttokens                                      (!) 2.4.1     3.0.0     
cellpose                                       (!) 2.2.3     4.0.6     
docstring-parser                                   0.16      0.17.0    
docutils                                       (!) 0.21.2    0.22.2    
eval-type-backport                                 0.1.3     0.2.2     
executing                                      (!) 0.10.0    2.2.1     
filelock                                           3.13.4    3.19.1    
fractal-task-tools                                 0.0.12    0.0.14    
imageio-ffmpeg                                 (!) 0.4.9     0.6.0     
lxml                                               5.4.0     6.0.2     
napari-segment-blobs-and-things-with-membranes (!) 0.3.8     0.3.12    
napari-skimage-regionprops                     (!) 0.8.2     0.10.1    
ngio                                               0.2.12    0.4.1     
numcodecs                                          0.15.1    0.16.3    
numpy                                              2.1.0     2.3.3     
nvidia-cublas-cu12                             (!) 12.8.4.1  12.9.1.4  
nvidia-cuda-cupti-cu12                         (!) 12.8.90   12.9.79   
nvidia-cuda-nvrtc-cu12                         (!) 12.8.93   12.9.86   
nvidia-cuda-runtime-cu12                       (!) 12.8.90   12.9.79   
nvidia-cudnn-cu12                              (!) 9.10.2.21 9.13.1.26 
nvidia-cufft-cu12                              (!) 11.3.3.83 11.4.1.4  
nvidia-cufile-cu12                             (!) 1.13.1.3  1.14.1.1  
nvidia-curand-cu12                             (!) 10.3.9.90 10.3.10.19
nvidia-cusolver-cu12                           (!) 11.7.3.90 11.7.5.82 
nvidia-cusparse-cu12                           (!) 12.5.8.93 12.5.10.65
nvidia-cusparselt-cu12                         (!) 0.7.1     0.8.1     
nvidia-nccl-cu12                               (!) 2.27.3    2.28.3    
nvidia-nvjitlink-cu12                          (!) 12.8.93   12.9.86   
nvidia-nvtx-cu12                               (!) 12.8.90   12.9.79   
ome-zarr-models                                    0.1.10    1.3       
pooch                                              1.8.0     1.8.2     
pydantic                                           2.8.2     2.11.10   
pydantic-core                                      2.20.1    2.41.1    
pydantic-zarr                                      0.7.0     0.8.4     
pytest                                         (!) 7.4.4     8.4.2     
stack-data                                     (!) 0.5.1     0.6.3     
stackview                                      (!) 0.8.2     0.18.0    
zarr                                               2.18.7    3.1.3     

Note: there may be dependencies in the table above which were not updated as part of this PR.
The reason is they require manual updating due to the way they are pinned.

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Coverage report

This PR does not seem to contain any modification to coverable code.

@tcompa tcompa marked this pull request as ready for review October 7, 2025 09:32
@tcompa tcompa merged commit 259a9df into main Oct 7, 2025
15 checks passed
@tcompa tcompa deleted the poetry-update branch October 7, 2025 09:32
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2 participants