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@tcompa tcompa commented Oct 21, 2025

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 7 updates, 0 removals

  - Updating psutil (7.1.0 -> 7.1.1)
  - Updating toolz (1.0.0 -> 1.1.0)
  - Updating dask (2025.9.1 -> 2025.10.0)
  - Updating tblib (3.1.0 -> 3.2.0)
  - Updating distributed (2025.9.1 -> 2025.10.0)
  - Updating h5py (3.15.0 -> 3.15.1)
  - Updating aiohttp (3.13.0 -> 3.13.1)

Writing lock file

Outdated dependencies before PR:

aiohttp                                            3.13.0              
anndata                                            0.10.9              
app-model                                      (!) 0.4.0               
arrow                                          (!) 1.3.0               
astropy-iers-data                              (!) 0.2025.10.13.0.37.17
asttokens                                      (!) 2.4.1               
cellpose                                       (!) 2.2.3               
dask                                               2025.9.1            
distributed                                        2025.9.1            
docstring-parser                                   0.16                
docutils                                       (!) 0.21.2              
eval-type-backport                                 0.1.3               
executing                                      (!) 0.10.0              
filelock                                           3.13.4              
fractal-task-tools                                 0.0.12              
h5py                                               3.15.0              
imageio-ffmpeg                                 (!) 0.4.9               
iniconfig                                      (!) 2.1.0               
ipykernel                                      (!) 7.0.0               
jupyter-core                                   (!) 5.8.1               
jupytext                                       (!) 1.17.3              
lxml                                               5.4.0               
napari                                         (!) 0.6.5               
napari-console                                 (!) 0.1.3               
napari-segment-blobs-and-things-with-membranes (!) 0.3.8               
napari-skimage-regionprops                     (!) 0.8.2               
ngio                                               0.2.12              
numcodecs                                          0.15.1              
numpy                                              2.1.0               
nvidia-cublas-cu12                             (!) 12.8.4.1            
nvidia-cuda-cupti-cu12                         (!) 12.8.90             
nvidia-cuda-nvrtc-cu12                         (!) 12.8.93             
nvidia-cuda-runtime-cu12                       (!) 12.8.90             
nvidia-cudnn-cu12                              (!) 9.10.2.21           
nvidia-cufft-cu12                              (!) 11.3.3.83           
nvidia-cufile-cu12                             (!) 1.13.1.3            
nvidia-curand-cu12                             (!) 10.3.9.90           
nvidia-cusolver-cu12                           (!) 11.7.3.90           
nvidia-cusparse-cu12                           (!) 12.5.8.93           
nvidia-cusparselt-cu12                         (!) 0.7.1               
nvidia-nccl-cu12                               (!) 2.27.3              
nvidia-nvjitlink-cu12                          (!) 12.8.93             
nvidia-nvtx-cu12                               (!) 12.8.90             
ome-zarr-models                                    0.1.10              
pillow                                         (!) 11.3.0              
pooch                                              1.8.0               
psutil                                             7.1.0               
psygnal                                        (!) 0.14.2              
pydantic                                           2.8.2               
pydantic-core                                      2.20.1              
pydantic-zarr                                      0.7.0               
pytest                                         (!) 7.4.4               
stack-data                                     (!) 0.5.1               
stackview                                      (!) 0.8.2               
tblib                                              3.1.0               
tifffile                                       (!) 2025.10.4           
toolz                                              1.0.0               
torch                                          (!) 2.8.0               
triton                                         (!) 3.4.0               
typer                                          (!) 0.19.2              
wrapt                                              1.17.3              
zarr                                               2.18.7              

Outdated dependencies after PR:

anndata                                            0.10.9    0.12.3    
app-model                                      (!) 0.4.0     0.5.0     
asttokens                                      (!) 2.4.1     3.0.0     
cellpose                                       (!) 2.2.3     4.0.7     
docstring-parser                                   0.16      0.17.0    
docutils                                       (!) 0.21.2    0.22.2    
eval-type-backport                                 0.1.3     0.2.2     
executing                                      (!) 0.10.0    2.2.1     
filelock                                           3.13.4    3.20.0    
fractal-task-tools                                 0.0.12    0.0.14    
imageio-ffmpeg                                 (!) 0.4.9     0.6.0     
lxml                                               5.4.0     6.0.2     
napari                                         (!) 0.6.5     0.6.6     
napari-console                                 (!) 0.1.3     0.1.4     
napari-segment-blobs-and-things-with-membranes (!) 0.3.8     0.3.12    
napari-skimage-regionprops                     (!) 0.8.2     0.10.1    
ngio                                               0.2.12    0.4.1     
numcodecs                                          0.15.1    0.16.3    
numpy                                              2.1.0     2.3.4     
nvidia-cublas-cu12                             (!) 12.8.4.1  12.9.1.4  
nvidia-cuda-cupti-cu12                         (!) 12.8.90   12.9.79   
nvidia-cuda-nvrtc-cu12                         (!) 12.8.93   12.9.86   
nvidia-cuda-runtime-cu12                       (!) 12.8.90   12.9.79   
nvidia-cudnn-cu12                              (!) 9.10.2.21 9.14.0.64 
nvidia-cufft-cu12                              (!) 11.3.3.83 11.4.1.4  
nvidia-cufile-cu12                             (!) 1.13.1.3  1.14.1.1  
nvidia-curand-cu12                             (!) 10.3.9.90 10.3.10.19
nvidia-cusolver-cu12                           (!) 11.7.3.90 11.7.5.82 
nvidia-cusparse-cu12                           (!) 12.5.8.93 12.5.10.65
nvidia-cusparselt-cu12                         (!) 0.7.1     0.8.1     
nvidia-nccl-cu12                               (!) 2.27.5    2.28.3    
nvidia-nvjitlink-cu12                          (!) 12.8.93   12.9.86   
nvidia-nvshmem-cu12                            (!) 3.3.20    3.4.5     
nvidia-nvtx-cu12                               (!) 12.8.90   12.9.79   
ome-zarr-models                                    0.1.10    1.3       
pooch                                              1.8.0     1.8.2     
pydantic                                           2.8.2     2.12.3    
pydantic-core                                      2.20.1    2.41.4    
pydantic-zarr                                      0.7.0     0.8.4     
pytest                                         (!) 7.4.4     8.4.2     
stack-data                                     (!) 0.5.1     0.6.3     
stackview                                      (!) 0.8.2     0.18.0    
wrapt                                              1.17.3    2.0.0     
zarr                                               2.18.7    3.1.3     

Note: there may be dependencies in the table above which were not updated as part of this PR.
The reason is they require manual updating due to the way they are pinned.

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@tcompa tcompa marked this pull request as ready for review October 21, 2025 09:57
@tcompa tcompa merged commit f08dcb4 into main Oct 21, 2025
15 checks passed
@tcompa tcompa deleted the poetry-update branch October 21, 2025 09:57
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