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@tcompa tcompa commented Oct 28, 2025

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 2 updates, 0 removals

  - Updating psutil (7.1.1 -> 7.1.2)
  - Updating pyarrow (21.0.0 -> 22.0.0)

Writing lock file

Outdated dependencies before PR:

anndata                                            0.10.9             
app-model                                      (!) 0.4.0              
astropy-iers-data                              (!) 0.2025.10.20.0.39.8
asttokens                                      (!) 2.4.1              
bleach                                         (!) 6.2.0              
cellpose                                       (!) 2.2.3              
docstring-parser                                   0.16               
docutils                                       (!) 0.21.2             
eval-type-backport                                 0.1.3              
executing                                      (!) 0.10.0             
filelock                                           3.13.4             
fractal-task-tools                                 0.0.12             
imageio-ffmpeg                                 (!) 0.4.9              
ipykernel                                      (!) 7.0.1              
jupyterlab                                     (!) 4.4.9              
jupyterlab-server                              (!) 2.27.3             
lark                                           (!) 1.3.0              
lxml                                               5.4.0              
matplotlib-inline                              (!) 0.1.7              
napari                                         (!) 0.6.5              
napari-console                                 (!) 0.1.3              
napari-segment-blobs-and-things-with-membranes (!) 0.3.8              
napari-skimage-regionprops                     (!) 0.8.2              
ngio                                               0.2.12             
numcodecs                                          0.15.1             
numpy                                              2.1.0              
nvidia-cublas-cu12                             (!) 12.8.4.1           
nvidia-cuda-cupti-cu12                         (!) 12.8.90            
nvidia-cuda-nvrtc-cu12                         (!) 12.8.93            
nvidia-cuda-runtime-cu12                       (!) 12.8.90            
nvidia-cudnn-cu12                              (!) 9.10.2.21          
nvidia-cufft-cu12                              (!) 11.3.3.83          
nvidia-cufile-cu12                             (!) 1.13.1.3           
nvidia-curand-cu12                             (!) 10.3.9.90          
nvidia-cusolver-cu12                           (!) 11.7.3.90          
nvidia-cusparse-cu12                           (!) 12.5.8.93          
nvidia-cusparselt-cu12                         (!) 0.7.1              
nvidia-nccl-cu12                               (!) 2.27.5             
nvidia-nvjitlink-cu12                          (!) 12.8.93            
nvidia-nvshmem-cu12                            (!) 3.3.20             
nvidia-nvtx-cu12                               (!) 12.8.90            
ome-zarr-models                                    0.1.10             
polars-runtime-32                                  1.34.0             
pooch                                              1.8.0              
psutil                                             7.1.1              
pyarrow                                            21.0.0             
pydantic                                           2.8.2              
pydantic-core                                      2.20.1             
pydantic-zarr                                      0.7.0              
pytest                                         (!) 7.4.4              
rpds-py                                        (!) 0.27.1             
stack-data                                     (!) 0.5.1              
stackview                                      (!) 0.8.2              
wrapt                                              1.17.3             
zarr                                               2.18.7             

Outdated dependencies after PR:

anndata                                            0.10.9    0.12.4    
app-model                                      (!) 0.4.0     0.5.0     
asttokens                                      (!) 2.4.1     3.0.0     
cellpose                                       (!) 2.2.3     4.0.7     
docstring-parser                                   0.16      0.17.0    
docutils                                       (!) 0.21.2    0.22.2    
eval-type-backport                                 0.1.3     0.2.2     
executing                                      (!) 0.10.0    2.2.1     
filelock                                           3.13.4    3.20.0    
fractal-task-tools                                 0.0.12    0.0.14    
imageio-ffmpeg                                 (!) 0.4.9     0.6.0     
lxml                                               5.4.0     6.0.2     
napari                                         (!) 0.6.5     0.6.6     
napari-console                                 (!) 0.1.3     0.1.4     
napari-segment-blobs-and-things-with-membranes (!) 0.3.8     0.3.12    
napari-skimage-regionprops                     (!) 0.8.2     0.10.1    
ngio                                               0.2.12    0.4.2     
numcodecs                                          0.15.1    0.16.3    
numpy                                              2.1.0     2.3.4     
nvidia-cublas-cu12                             (!) 12.8.4.1  12.9.1.4  
nvidia-cuda-cupti-cu12                         (!) 12.8.90   12.9.79   
nvidia-cuda-nvrtc-cu12                         (!) 12.8.93   12.9.86   
nvidia-cuda-runtime-cu12                       (!) 12.8.90   12.9.79   
nvidia-cudnn-cu12                              (!) 9.10.2.21 9.14.0.64 
nvidia-cufft-cu12                              (!) 11.3.3.83 11.4.1.4  
nvidia-cufile-cu12                             (!) 1.13.1.3  1.14.1.1  
nvidia-curand-cu12                             (!) 10.3.9.90 10.3.10.19
nvidia-cusolver-cu12                           (!) 11.7.3.90 11.7.5.82 
nvidia-cusparse-cu12                           (!) 12.5.8.93 12.5.10.65
nvidia-cusparselt-cu12                         (!) 0.7.1     0.8.1     
nvidia-nccl-cu12                               (!) 2.27.5    2.28.7    
nvidia-nvjitlink-cu12                          (!) 12.8.93   12.9.86   
nvidia-nvshmem-cu12                            (!) 3.3.20    3.4.5     
nvidia-nvtx-cu12                               (!) 12.8.90   12.9.79   
ome-zarr-models                                    0.1.10    1.3       
polars-runtime-32                                  1.34.0    1.35.0    
pooch                                              1.8.0     1.8.2     
pydantic                                           2.8.2     2.12.3    
pydantic-core                                      2.20.1    2.41.4    
pydantic-zarr                                      0.7.0     0.8.4     
pytest                                         (!) 7.4.4     8.4.2     
stack-data                                     (!) 0.5.1     0.6.3     
stackview                                      (!) 0.8.2     0.18.0    
wrapt                                              1.17.3    2.0.0     
zarr                                               2.18.7    3.1.3     

Note: there may be dependencies in the table above which were not updated as part of this PR.
The reason is they require manual updating due to the way they are pinned.

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Coverage report

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FileStatementsMissingCoverageCoverage
(new stmts)
Lines missing
  fractal_tasks_core
  channels.py
  fractal_tasks_core/ngff
  specs.py
  fractal_tasks_core/tables
  v1.py
  fractal_tasks_core/tasks
  io_models.py
Project Total  

This report was generated by python-coverage-comment-action

@tcompa tcompa marked this pull request as ready for review October 28, 2025 09:29
@tcompa tcompa merged commit 3f0d1f5 into main Oct 28, 2025
15 checks passed
@tcompa tcompa deleted the poetry-update branch October 28, 2025 09:30
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2 participants