Skip to content

Conversation

@tcompa
Copy link
Collaborator

@tcompa tcompa commented Nov 4, 2025

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 10 updates, 0 removals

  - Updating psutil (7.1.2 -> 7.1.3)
  - Updating cloudpickle (3.1.1 -> 3.1.2)
  - Updating fsspec (2025.9.0 -> 2025.10.0)
  - Updating scipy (1.16.2 -> 1.16.3)
  - Updating wrapt (1.17.3 -> 2.0.0)
  - Updating deprecated (1.2.18 -> 1.3.1)
  - Updating tblib (3.2.0 -> 3.2.1)
  - Updating polars-runtime-32 (1.34.0 -> 1.35.1)
  - Updating aiohttp (3.13.1 -> 3.13.2)
  - Updating polars (1.34.0 -> 1.35.1)

Writing lock file

Outdated dependencies before PR:

aiohttp                                            3.13.1              
anndata                                            0.10.9              
app-model                                      (!) 0.4.0               
astropy-iers-data                              (!) 0.2025.10.27.0.39.10
asttokens                                      (!) 2.4.1               
cellpose                                       (!) 2.2.3               
cloudpickle                                        3.1.1               
deprecated                                         1.2.18              
docstring-parser                                   0.16                
docutils                                       (!) 0.21.2              
eval-type-backport                                 0.1.3               
executing                                      (!) 0.10.0              
filelock                                           3.13.4              
fractal-task-tools                                 0.0.12              
fsspec                                             2025.9.0            
imageio-ffmpeg                                 (!) 0.4.9               
ipywidgets                                     (!) 8.1.7               
jupyterlab-widgets                             (!) 3.0.15              
lxml                                               5.4.0               
napari                                         (!) 0.6.5               
napari-console                                 (!) 0.1.3               
napari-segment-blobs-and-things-with-membranes (!) 0.3.8               
napari-skimage-regionprops                     (!) 0.8.2               
ngio                                               0.2.12              
numcodecs                                          0.15.1              
numpy                                              2.1.0               
nvidia-cublas-cu12                             (!) 12.8.4.1            
nvidia-cuda-cupti-cu12                         (!) 12.8.90             
nvidia-cuda-nvrtc-cu12                         (!) 12.8.93             
nvidia-cuda-runtime-cu12                       (!) 12.8.90             
nvidia-cudnn-cu12                              (!) 9.10.2.21           
nvidia-cufft-cu12                              (!) 11.3.3.83           
nvidia-cufile-cu12                             (!) 1.13.1.3            
nvidia-curand-cu12                             (!) 10.3.9.90           
nvidia-cusolver-cu12                           (!) 11.7.3.90           
nvidia-cusparse-cu12                           (!) 12.5.8.93           
nvidia-cusparselt-cu12                         (!) 0.7.1               
nvidia-nccl-cu12                               (!) 2.27.5              
nvidia-nvjitlink-cu12                          (!) 12.8.93             
nvidia-nvshmem-cu12                            (!) 3.3.20              
nvidia-nvtx-cu12                               (!) 12.8.90             
ome-zarr-models                                    0.1.10              
pint                                           (!) 0.25                
polars                                             1.34.0              
polars-runtime-32                                  1.34.0              
pooch                                              1.8.0               
psutil                                             7.1.2               
pydantic                                           2.8.2               
pydantic-core                                      2.20.1              
pydantic-zarr                                      0.7.0               
pytest                                         (!) 7.4.4               
scipy                                              1.16.2              
stack-data                                     (!) 0.5.1               
stackview                                      (!) 0.8.2               
tblib                                              3.2.0               
webcolors                                      (!) 24.11.1             
widgetsnbextension                             (!) 4.0.14              
wrapt                                              1.17.3              
zarr                                               2.18.7              

Outdated dependencies after PR:

anndata                                            0.10.9    0.12.5    
app-model                                      (!) 0.4.0     0.5.0     
asttokens                                      (!) 2.4.1     3.0.0     
cellpose                                       (!) 2.2.3     4.0.7     
docstring-parser                                   0.16      0.17.0    
docutils                                       (!) 0.21.2    0.22.2    
eval-type-backport                                 0.1.3     0.2.2     
executing                                      (!) 0.10.0    2.2.1     
filelock                                           3.13.4    3.20.0    
fractal-task-tools                                 0.0.12    0.0.14    
imageio-ffmpeg                                 (!) 0.4.9     0.6.0     
lxml                                               5.4.0     6.0.2     
napari                                         (!) 0.6.5     0.6.6     
napari-console                                 (!) 0.1.3     0.1.4     
napari-segment-blobs-and-things-with-membranes (!) 0.3.8     0.3.12    
napari-skimage-regionprops                     (!) 0.8.2     0.10.1    
ngio                                               0.2.12    0.4.3     
numcodecs                                          0.15.1    0.16.3    
numpy                                              2.1.0     2.3.4     
nvidia-cublas-cu12                             (!) 12.8.4.1  12.9.1.4  
nvidia-cuda-cupti-cu12                         (!) 12.8.90   12.9.79   
nvidia-cuda-nvrtc-cu12                         (!) 12.8.93   12.9.86   
nvidia-cuda-runtime-cu12                       (!) 12.8.90   12.9.79   
nvidia-cudnn-cu12                              (!) 9.10.2.21 9.14.0.64 
nvidia-cufft-cu12                              (!) 11.3.3.83 11.4.1.4  
nvidia-cufile-cu12                             (!) 1.13.1.3  1.14.1.1  
nvidia-curand-cu12                             (!) 10.3.9.90 10.3.10.19
nvidia-cusolver-cu12                           (!) 11.7.3.90 11.7.5.82 
nvidia-cusparse-cu12                           (!) 12.5.8.93 12.5.10.65
nvidia-cusparselt-cu12                         (!) 0.7.1     0.8.1     
nvidia-nccl-cu12                               (!) 2.27.5    2.28.7    
nvidia-nvjitlink-cu12                          (!) 12.8.93   12.9.86   
nvidia-nvshmem-cu12                            (!) 3.3.20    3.4.5     
nvidia-nvtx-cu12                               (!) 12.8.90   12.9.79   
ome-zarr-models                                    0.1.10    1.3       
pooch                                              1.8.0     1.8.2     
pydantic                                           2.8.2     2.12.3    
pydantic-core                                      2.20.1    2.41.4    
pydantic-zarr                                      0.7.0     0.8.4     
pytest                                         (!) 7.4.4     8.4.2     
stack-data                                     (!) 0.5.1     0.6.3     
stackview                                      (!) 0.8.2     0.18.0    
zarr                                               2.18.7    3.1.3     

Note: there may be dependencies in the table above which were not updated as part of this PR.
The reason is they require manual updating due to the way they are pinned.

@github-actions
Copy link

github-actions bot commented Nov 4, 2025

Coverage report

This PR does not seem to contain any modification to coverable code.

@tcompa tcompa marked this pull request as ready for review November 4, 2025 09:35
@tcompa tcompa merged commit d9eb849 into main Nov 4, 2025
15 checks passed
@tcompa tcompa deleted the poetry-update branch November 4, 2025 09:35
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants