feature: support single batch gtdbtk classification#130
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franciscozorrilla wants to merge 1 commit intomasterfrom
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feature: support single batch gtdbtk classification#130franciscozorrilla wants to merge 1 commit intomasterfrom
franciscozorrilla wants to merge 1 commit intomasterfrom
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# 🩻 Single batch submission of GTDBTk-based taxonomic classification 🚀 ## 🐍 Snakefile tasks - [x] create GTDBTk_singlerun for single job submission of small number of genomes ## 🔨 Additional modifications for full integration/support - [ ] metaGEM.sh: add options + support for new tasks - [ ] config.yaml: add params used in new tasks - [ ] config readme file - [ ] main readme file: text
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🩻 Single batch submission of GTDBTk-based taxonomic classification 🚀
Current GTDBTk rule is great when dealing with many metagenomes, but when dealing with many isolate samples it makes more sense to follow this subworkflow task.
🐍 Snakefile tasks
🔨 Additional modifications for full integration/support