Skip to content

doc: add fulcrum genomics more prominently #24

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
nh13 merged 1 commit into from
Jan 30, 2025
Merged

doc: add fulcrum genomics more prominently #24

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions .github/logos/fulcrumgenomics.svg
View file
Open in desktop
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
12 changes: 11 additions & 1 deletion README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,9 +7,19 @@
<a href="http://bioconda.github.io/recipes/guide-counter/README.html"><img src="https://img.shields.io/conda/dn/bioconda/guide-counter.svg?label=bioconda" alt="Bioconda"></a>
<a href="https://doi.org/10.5281/zenodo.6375791"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.6375791.svg" alt="DOI"></a>
<br>
A better, faster way to count guides in CRISPR screens.
</p>

A better, faster way to count guides in CRISPR screens.

<p>
<a href float="left"="https://fulcrumgenomics.com"><img src=".github/logos/fulcrumgenomics.svg" alt="Fulcrum Genomics" height="100"/></a>
</p>

[Visit us at Fulcrum Genomics](www.fulcrumgenomics.com) to learn more about how we can power your Bioinformatics with guide-counter and beyond.

<a href="mailto:contact@fulcrumgenomics.com?subject=[GitHub inquiry]"><img src="https://img.shields.io/badge/Email_us-brightgreen.svg?&style=for-the-badge&logo=gmail&logoColor=white"/></a>
<a href="https://www.fulcrumgenomics.com"><img src="https://img.shields.io/badge/Visit_Us-blue.svg?&style=for-the-badge&logo=wordpress&logoColor=white"/></a>

## Overview

`guide-counter` is a tool for processing FASTQ files from CRISPR screen experiments to generate a matrix of per-sample guide counts. It can be used as a faster, more accurate, drop in replacement for `mageck count`. By default `guide-counter` will look for guide seqeunces in the reads with 0 or 1 mismatches vs. the expected guides, but can be run in exact matching mode.
Expand Down
Loading