feat: output the HN tag and optionally add the MD to the XA tag#25
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This requires us to patch bwa, which we store in the patches sub-directory. They are applied before we build, and reverted after the build completes (regardless of success). They can be removed when the bwa PRs are merged and submodule updated. See: lh3/bwa#438 See: lh3/bwa#439
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## main #25 +/- ##
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Coverage 100.00% 100.00%
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Files 1 1
Lines 3 3
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Hits 3 3 ☔ View full report in Codecov by Sentry. 🚀 New features to boost your workflow:
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This requires us to patch bwa, which we store in the patches sub-directory. They are applied before we build, and reverted after the build completes (regardless of success). They can be removed when the bwa PRs are merged and submodule updated.
See: lh3/bwa#438
See: lh3/bwa#439
Fixes #17
Fixes #20
📚 Documentation preview 📚: https://pybwa--25.org.readthedocs.build/en/25/