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I suppose you are using this software?
https://github.com/PontusO/RP2040-Decoder

The software is using a calibration process at factory reset which might be causing you trouble. I removed this in the newest software in this Repository. However you cant just use the software with your hardware without changing pin definitions.

This is the schematic for your board:
https://usercontent.one/wp/ilabs.se/wp-content/uploads/2024/10/99-00299-1_V2.0.pdf?media=1689860297

This is the schematic for my USB version:
https://gab-k.github.io/RP2040-Decoder/sphinx/html/_images/RP2040-Decoder1.svg

I dont really know what the LED does in the iLabs software version in Pontus' repository.
What i can tell you …

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@Ma77h3w
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