Add flag to skip verification of SSL certificate#205
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tflowers15 wants to merge 3 commits intogalaxyproject:masterfrom
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Add flag to skip verification of SSL certificate#205tflowers15 wants to merge 3 commits intogalaxyproject:masterfrom
tflowers15 wants to merge 3 commits intogalaxyproject:masterfrom
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Update to common_parser to include an optional flag to skip verification of the SSL certificate when connecting to a Galaxy instance. Default value of 'False' when not included in a function call (SSL certificate will be verified). Including the flag in the function call sets the value to 'True' (SSL certificate will NOT be verified).
Added check of skip_verify flag to python scripts after the line of main() that makes the Galaxy connections, gi = get_galaxy_connection(). SSL certificate verification is skipped if the skip_verify flag is True (default is False).
Update to common_parser to include an optional flag to skip verification of the SSL certificate when connecting to a Galaxy instance. Default value of 'False' when not included in a function call (SSL certificate will be verified). Including the flag in the function call sets the value to 'True' (SSL certificate will NOT be verified). Added check of skip_verify flag to python scripts after the line of main() that makes the Galaxy connections, gi = get_galaxy_connection(). SSL certificate verification is skipped if the skip_verify flag is True (default is False).
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Within the Galaxy connection object (
gi) created using bioblend, there is an attribute the turn verification of the SSL certificate on/off:gi.verify. The default isgi.verify=True. There are some circumstances when there may be issues with verifying the SSL certificate, which results in the Galaxy connection failing. If this happens it is useful to be able to setgi.verify=Falseso as to still connect to the Galaxy instance.This pull request updates the
common_parserto include an optional flag to skip verification of the SSL certificate when connecting to a Galaxy instance. The default value isFalsewhen not included in a function call (the SSL certificate will be verified). Including the flag in the function call sets the flag toTrue(the SSL certificate will NOT be verified).Added check of the
skip_verifyflag to python scripts that connect to a Galaxy instance after the line ofmain()that makes the Galaxy connections,gi=get_galaxy_connection(). SSL certificate verification is skipped if theskip_verifyflag isTrue(default isFalse):if args.skip_verify: gi.verify = False.