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update docs with make open-docs #227

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28 changes: 14 additions & 14 deletions docs/ephemeris.rst
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Expand Up @@ -9,109 +9,109 @@ ephemeris.common\_parser module

.. automodule:: ephemeris.common_parser
:members:
:undoc-members:
:show-inheritance:
:undoc-members:

ephemeris.ephemeris\_log module
-------------------------------

.. automodule:: ephemeris.ephemeris_log
:members:
:undoc-members:
:show-inheritance:
:undoc-members:

ephemeris.generate\_tool\_list\_from\_ga\_workflow\_files module
----------------------------------------------------------------

.. automodule:: ephemeris.generate_tool_list_from_ga_workflow_files
:members:
:undoc-members:
:show-inheritance:
:undoc-members:

ephemeris.get\_tool\_list\_from\_galaxy module
----------------------------------------------

.. automodule:: ephemeris.get_tool_list_from_galaxy
:members:
:undoc-members:
:show-inheritance:
:undoc-members:

ephemeris.install\_tool\_deps module
------------------------------------

.. automodule:: ephemeris.install_tool_deps
:members:
:undoc-members:
:show-inheritance:
:undoc-members:

ephemeris.run\_data\_managers module
------------------------------------

.. automodule:: ephemeris.run_data_managers
:members:
:undoc-members:
:show-inheritance:
:undoc-members:

ephemeris.set\_library\_permissions module
------------------------------------------

.. automodule:: ephemeris.set_library_permissions
:members:
:undoc-members:
:show-inheritance:
:undoc-members:

ephemeris.setup\_data\_libraries module
---------------------------------------

.. automodule:: ephemeris.setup_data_libraries
:members:
:undoc-members:
:show-inheritance:
:undoc-members:

ephemeris.shed\_tools module
----------------------------

.. automodule:: ephemeris.shed_tools
:members:
:undoc-members:
:show-inheritance:
:undoc-members:

ephemeris.shed\_tools\_args module
----------------------------------

.. automodule:: ephemeris.shed_tools_args
:members:
:undoc-members:
:show-inheritance:
:undoc-members:

ephemeris.shed\_tools\_methods module
-------------------------------------

.. automodule:: ephemeris.shed_tools_methods
:members:
:undoc-members:
:show-inheritance:
:undoc-members:

ephemeris.sleep module
----------------------

.. automodule:: ephemeris.sleep
:members:
:undoc-members:
:show-inheritance:
:undoc-members:

ephemeris.workflow\_install module
----------------------------------

.. automodule:: ephemeris.workflow_install
:members:
:undoc-members:
:show-inheritance:
:undoc-members:

Module contents
---------------

.. automodule:: ephemeris
:members:
:undoc-members:
:show-inheritance:
:undoc-members: