Implement more tool validation APIs in Galaxy to mirror the Tool Shed. #22196
Open
jmchilton wants to merge 2 commits intogalaxyproject:devfrom
Open
Implement more tool validation APIs in Galaxy to mirror the Tool Shed. #22196jmchilton wants to merge 2 commits intogalaxyproject:devfrom
jmchilton wants to merge 2 commits intogalaxyproject:devfrom
Conversation
Mirror ToolShed tool endpoints on Galaxy's API:
- GET /api/tools/{id}/parsed — ParsedTool JSON (inputs + outputs)
- GET /api/tools/{id}/versions/{v}/parsed — versioned variant
- GET /api/tools/{id}/versions/{v}/parameter_request_schema
- GET /api/tools/{id}/versions/{v}/parameter_landing_request_schema
- GET /api/tools/{id}/versions/{v}/parameter_test_case_xml_schema
Enables galaxy-tool-cache to fetch tool metadata from a running Galaxy
instance instead of requiring ToolShed access.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Add /parsed and versioned schema endpoints to Galaxy tools API.
Mirror ToolShed tool endpoints on Galaxy's API:
Enables galaxy-tool-cache to fetch tool metadata from a running Galaxy instance in addition to ToolShed - it will make it easier to work around various bugs in the tool shed (#22181 , #22007) found during development and is needed longer term for custom Galaxy tools not deployed to the Tool Shed at private Galaxy instances.
How to test the changes?
(Select all options that apply)
License