Merge pull request #651 from planemo-autoupdate/workflows/epigenetics/chipseq-sr

Updating workflows/epigenetics/chipseq-sr from 0.12 to 0.13

Author: Lucille Delisle

workflows/epigenetics/chipseq-sr/CHANGELOG.md

@@ -1,5 +1,10 @@
 # Changelog
 
+## [0.13] 2025-01-27
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0`
+
 ## [0.12] 2024-09-23
 
 ### Automatic update

workflows/epigenetics/chipseq-sr/chipseq-sr-tests.yml

@@ -24,7 +24,7 @@
     'MultiQC on input dataset(s): Stats':
       asserts:
         has_line:
-          line: "Sample	MACS2_mqc_generalstats_macs2_d	MACS2_mqc_generalstats_macs2_treatment_redundant_rate	MACS2_mqc_generalstats_macs2_peak_count	Bowtie 2 / HiSAT2_mqc_generalstats_bowtie_2_hisat2_overall_alignment_rate	Cutadapt_mqc_generalstats_cutadapt_percent_trimmed"
+          line: "Sample	macs2-d	macs2-treatment_redundant_rate	macs2-peak_count	bowtie_2_hisat2-overall_alignment_rate	cutadapt-percent_trimmed"
         has_text_matching:
           expression: "wt_H3K4me3\t200.0\t0.0\t4\t98.[0-9]*\t4.6[0-9]*"
     filtered BAM:

workflows/epigenetics/chipseq-sr/chipseq-sr.ga

@@ -10,7 +10,7 @@
     ],
     "format-version": "0.1",
     "license": "MIT",
-    "release": "0.12",
+    "release": "0.13",
     "name": "ChIPseq_SR",
     "steps": {
         "0": {
@@ -614,7 +614,7 @@
         },
         "11": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0",
             "errors": null,
             "id": 11,
             "input_connections": {
@@ -659,15 +659,15 @@
                     "output_name": "plots"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "f7e2f1eb3a16",
+                "changeset_revision": "a7e081ceb76a",
                 "name": "multiqc",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"comment\": \"\", \"export\": true, \"flat\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"cutadapt\", \"__current_case__\": 5, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"software_cond\": {\"software\": \"bowtie2\", \"__current_case__\": 3, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"software_cond\": {\"software\": \"macs2\", \"__current_case__\": 16, \"input\": {\"__class__\": \"ConnectedValue\"}}}], \"saveLog\": \"false\", \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "1.24.1+galaxy0",
+            "tool_version": "1.27+galaxy0",
             "type": "tool",
             "uuid": "fb066848-43df-412a-9767-9613bac7d961",
             "when": null,