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Hello! This is an automated update of the following workflow: workflows/transcriptomics/rnaseq-de. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

  • toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.8+galaxy0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/deseq2/deseq2/2.11.40.8+galaxy1

The workflow release number has been updated from 0.5 to 0.6.

If you want to skip this change, close this PR without deleting the branch. It will be reopened if another change is detected.
Any commit from another author than 'planemo-autoupdate' will prevent more auto-updates.
To ignore manual changes and allow autoupdates, delete the branch.

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Test Results (powered by Planemo)

Test Summary

Test State Count
Total 1
Passed 0
Error 1
Failure 0
Skipped 0
Errored Tests
  • ❌ rnaseq-de-filtering-plotting.ga_0

    Execution Problem:

    • Upload job [a85e2e398388e1c4] produced output [1: Saccharomyces_cerevisiae.R64-1-1.113.gtf] in state [error]
      

@gxydevbot gxydevbot force-pushed the workflows/transcriptomics/rnaseq-de branch from 95263d8 to ca76203 Compare January 12, 2026 07:23
@gxydevbot gxydevbot changed the title Updating workflows/transcriptomics/rnaseq-de from 0.5 to 0.6 Updating workflows/transcriptomics/rnaseq-de from 0.5 to 0.6 Jan 12, 2026
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There are new updates, they have been integrated to the PR, check the file diff.

@mvdbeek mvdbeek merged commit e25500b into galaxyproject:main Jan 14, 2026
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mvdbeek commented Jan 14, 2026

Attention: deployment skipped!

https://github.com/galaxyproject/iwc/actions/runs/20997613698

@gxydevbot gxydevbot deleted the workflows/transcriptomics/rnaseq-de branch January 19, 2026 07:21
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2 participants