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Updating workflows/epigenetics/consensus-peaks from 1.4 to 1.5 #1192

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5 changes: 5 additions & 0 deletions workflows/epigenetics/consensus-peaks/CHANGELOG.md
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# Changelog

## [1.5] - 2026-03-30

### Automatic update
- `toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.22+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/samtools_view/samtools_view/1.22+galaxy2`

## [1.4] - 2026-01-19

### Automatic update
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24 changes: 12 additions & 12 deletions workflows/epigenetics/consensus-peaks/consensus-peaks-atac-cutandrun.ga
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{
"a_galaxy_workflow": "true",
"annotation": "Identifies high-confidence consensus peaks from ATAC-seq or CUT&RUN replicate experiments. The workflow calls peaks on individual replicates and identifies their intersection. To control for sequencing depth differences, it subsamples all replicates to the smallest library size, performs peak calling on the combined normalized data, and retains only peaks whose summits overlap with intersections from a user-defined minimum number of replicates.",
"annotation": "Identifies high-confidence consensus peaks from ATAC-seq or CUT&RUN replicate experiments. The workflow calls peaks on individual replicates and identifies their intersection. To control for sequencing depth differences, it subsamples all replicates to the smallest library size, performs peak calling on the combined normalized data, and retains only peaks whose summits overlap with intersections from a user-defined minimum number of replicates.",
"comments": [
{
"child_steps": [
Expand Down Expand Up @@ -81,7 +81,7 @@
],
"format-version": "0.1",
"license": "MIT",
"name": "Consensus Peak Calling for ATAC-seq and CUT&RUN Replicates",
"name": "Consensus Peak Calling for ATAC-seq and CUT&RUN Replicates",
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"annotation": "A collection with n replicates. BAM should not have duplicates.",
Expand Down Expand Up @@ -239,7 +239,7 @@
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Expand Down Expand Up @@ -268,16 +268,16 @@
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Expand Down Expand Up @@ -1004,7 +1004,7 @@
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Expand Down Expand Up @@ -1037,16 +1037,16 @@
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Expand Down Expand Up @@ -1453,7 +1453,7 @@
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20 changes: 10 additions & 10 deletions workflows/epigenetics/consensus-peaks/consensus-peaks-chip-pe.ga
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Expand Down Expand Up @@ -222,16 +222,16 @@
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Expand Down Expand Up @@ -958,7 +958,7 @@
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Expand Down Expand Up @@ -991,16 +991,16 @@
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Expand Down Expand Up @@ -1361,7 +1361,7 @@
"tags": [
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20 changes: 10 additions & 10 deletions workflows/epigenetics/consensus-peaks/consensus-peaks-chip-sr.ga
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Expand Up @@ -193,7 +193,7 @@
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Expand Down Expand Up @@ -222,16 +222,16 @@
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Expand Down Expand Up @@ -958,7 +958,7 @@
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Expand Down Expand Up @@ -991,16 +991,16 @@
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Expand Down Expand Up @@ -1361,7 +1361,7 @@
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