Updating workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling from 0.5.4 to 0.5.5 #777
Open
gxydevbot wants to merge 1 commit intogalaxyproject:mainfrom
Conversation
gxydevbot
changed the title
gxydevbot
force-pushed
the
workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling
branch
from
7801fab to
f54d146
Compare
Contributor
Author
|
There are new updates, they have been integrated to the PR, check the file diff. |
gxydevbot
force-pushed
the
workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling
branch
from
f54d146 to
168bd0e
Compare
Contributor
Author
|
There are new updates, they have been integrated to the PR, check the file diff. |
gxydevbot
force-pushed
the
workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling
branch
from
168bd0e to
4e8159b
Compare
Contributor
Author
|
There are new updates, they have been integrated to the PR, check the file diff. |
1 similar comment
Contributor
Author
|
There are new updates, they have been integrated to the PR, check the file diff. |
gxydevbot
force-pushed
the
workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling
branch
2 times, most recently
from
3d4072d to
eb23616
Compare
Contributor
Author
|
There are new updates, they have been integrated to the PR, check the file diff. |
gxydevbot
force-pushed
the
workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling
branch
from
eb23616 to
78b70e3
Compare
Contributor
Author
|
There are new updates, they have been integrated to the PR, check the file diff. |
1 similar comment
Contributor
Author
|
There are new updates, they have been integrated to the PR, check the file diff. |
gxydevbot
force-pushed
the
workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling
branch
from
78b70e3 to
3377e1d
Compare
gxydevbot
force-pushed
the
workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling
branch
from
3377e1d to
05cbfa9
Compare
Contributor
Author
|
There are new updates, they have been integrated to the PR, check the file diff. |
gxydevbot
force-pushed
the
workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling
branch
from
05cbfa9 to
04ad236
Compare
Contributor
Author
|
There are new updates, they have been integrated to the PR, check the file diff. |
Test Results (powered by Planemo)Test Summary
Errored Tests
|
gxydevbot
force-pushed
the
workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling
branch
from
04ad236 to
ee5530b
Compare
Contributor
Author
|
There are new updates, they have been integrated to the PR, check the file diff. |
gxydevbot
force-pushed
the
workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling
branch
from
ee5530b to
a6af83b
Compare
Contributor
Author
|
There are new updates, they have been integrated to the PR, check the file diff. |
gxydevbot
force-pushed
the
workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling
branch
from
a6af83b to
28102d0
Compare
Contributor
Author
|
There are new updates, they have been integrated to the PR, check the file diff. |
…artic-variant-calling from 0.5.4 to 0.5.5
gxydevbot
force-pushed
the
workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling
branch
from
28102d0 to
66630b0
Compare
Contributor
Author
|
There are new updates, they have been integrated to the PR, check the file diff. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Hello! This is an automated update of the following workflow: workflows/sars-cov-2-variant-calling/sars-cov-2-pe-illumina-artic-variant-calling. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.
By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:
toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.18should be updated totoolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa_mem/0.7.19The workflow release number has been updated from 0.5.4 to 0.5.5.
If you want to skip this change, close this PR without deleting the branch. It will be reopened if another change is detected.
Any commit from another author than 'planemo-autoupdate' will prevent more auto-updates.
To ignore manual changes and allow autoupdates, delete the branch.