Rename wiki files

[xuanweishan]

Description

This PR solved the issue #325.
To support different OS file system, we rename the file names with : and *.

Changes

• File names: Replace : with [ ], and replace * with {} in file names.
  • doc/wiki/Installation-related/Installation:*
    => doc/wiki/Installation-related/[Installation]*
  • doc/wiki/In-Situ-Python-Analysis-related/In-Situ-Python-Analysis:*
    => doc/wiki/In-Situ-Python-Analysis-related/[In-Situ-Python-Analysis]*
  • doc/wiki/Contribute-related/Contribute:*
    => doc/wiki/Contribute-related/[Contribute]*
  • doc/wiki/Performance-Optimizations-related/Performance-Optimizations:*
    => doc/wiki/Performance-Optimizations-related/[Performance-Optimizations]*
  • doc/wiki/Quick-Start-related/Quick-Start:*
    => doc/wiki/Quick-Start-related/[Quick-Start]*
  • doc/wiki/Runtime-Parameters-related/Runtime-Parameters:*
    => doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]*
    • doc/wiki/Runtime-Parameters:-Input__Flag_*.md
      => doc/wiki/[Runtime-Parameters]-Input__Flag_{}.md
  • doc/wiki/Simulation-Logs-related/Simulation-Logs:*
    => doc/wiki/Simulation-Logs-related/[Simulation-Logs]*
    • doc/wiki/Simulation-Logs:-Record__TimingMPI_Rank*.md
      => doc/wiki/[Simulation-Logs]-Record__TimingMPI_Rank{}.md
• Modify the links related to name changed file.

[ChunYen-Chen]

@xuanweishan Before reviewing the PR, I noticed that the filenames in the workflow file (.github/workflows/update_all_parameter_page.yml) and the wiki tool (tool/wiki/sync_runtime_parameter.py) have not been updated. Once those are updated, I will begin the review.

[xuanweishan]

Those two files are updated.

[ChunYen-Chen]

@xuanweishan please also fix the following links. Also, how about renaming the files under ELBDM-related to [ELBDM]-* to unify the naming style?

./doc/wiki/Adding-New-Simulations.md:235:for example, [[ GRACKLE_METAL | Runtime-Parameters:-Chemistry-and-Radiation#GRACKLE_METAL ]]).
./doc/wiki/Adding-New-Simulations.md:386:[[OPT__OUTPUT_USER | Runtime-Parameters:-Outputs#OPT__OUTPUT_USER]].
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__MemoryPool.md:2:[[OPT__MEMORY_POOL | Runtime-Parameters:-Refinement#OPT__MEMORY_POOL]].
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__MemoryPool.md:26:[[MAX_LEVEL | Runtime-Parameters:-Refinement#MAX_LEVEL]]+1
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__MemoryPool.md:28:[[MAX_LEVEL | Runtime-Parameters:-Refinement#MAX_LEVEL]]+1
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:8:* [[All | Runtime-Parameters:-All]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:11:* [[General | Runtime-Parameters:-General]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:14:* [[MPI and OpenMP | Runtime-Parameters:-MPI-and-OpenMP]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:17:* [[GPU | Runtime-Parameters:-GPU]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:20:* [[Units | Runtime-Parameters:-Units]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:23:* [[Initial Conditions | Runtime-Parameters:-Initial-Conditions]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:26:* [[Hydro | Runtime-Parameters:-Hydro]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:29:* [[Gravity | Runtime-Parameters:-Gravity]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:32:* [[Particles | Runtime-Parameters:-Particles]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:35:* [[Cosmology | Runtime-Parameters:-Cosmology]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:38:* [[Chemistry and Radiation | Runtime-Parameters:-Chemistry-and-Radiation]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:41:* [[Star Formation | Runtime-Parameters:-Star-Formation]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:44:* [[Feedback | Runtime-Parameters:-Feedback]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:47:* [[Timestep | Runtime-Parameters:-Timestep]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:50:* [[Refinement | Runtime-Parameters:-Refinement]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:53:* [[Interpolation | Runtime-Parameters:-Interpolation]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:56:* [[Outputs | Runtime-Parameters:-Outputs]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:59:* [[Miscellaneous | Runtime-Parameters:-Miscellaneous]]
./doc/wiki/Runtime-Parameters-related/[Runtime-Parameters]-Input__Parameter.md:100:system (set by [[OPT__UNIT | Runtime-Parameters:-Units#OPT__UNIT]]) unless otherwise specified.

[xuanweishan]

@ChunYen-Chen I've rename files in doc/wiki/ELBDM-related and update the related links.
I also update file names and links in script and wiki pages.

[ChunYen-Chen]

@xuanweishan Thanks for the contribution. I have left some comments. Please update the lines with comment tags [Bug] or [Style].

[Bug]: Some of the [[[xxx] yyy | page-link]] does not render the correct hypre link "[xxx] yyy" (currently "[xxx] yyy" ). By changing the text to [[ [xxx] yyy | page-link ]], the link can be shown correctly.

Our current wiki pages have an issue. [Runtime-Parameters]—All.md takes too long to render, so the page does not show on GitHub. (@hyschive)

[xuanweishan]

@ChunYen-Chen Thanks for the suggestions, I've apply suggestions above.

[ChunYen-Chen]

@xuanweishan Thanks for the update. I have left some final comments.

[xuanweishan]

The suggestions above are applied. Please check.

[xuanweishan]

@ChunYen-Chen The bug is fixed. Thanks for the carefully checking.

[ChunYen-Chen]

@xuanweishan Thanks for the update.
@hyschive I think this PR is ready to go.

[hyschive]

@xuanweishan @ChunYen-Chen Thanks for your contributions and the detailed review!