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ODM-12958: changed data classes: #176

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Merged
marijan-mihaljev merged 3 commits into from
Dec 30, 2025
Merged

ODM-12958: changed data classes: #176

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0279963
ODM-12958: changed data classes:
marijan-mihaljev Dec 26, 2025
57719bb
ODM-12958: fixed typo for Microbiome / Metagenomics
marijan-mihaljev Dec 29, 2025
50286a5
ODM-12958: fixed typo for Microbiome / Metagenomics
marijan-mihaljev Dec 29, 2025
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2 changes: 1 addition & 1 deletion docs/tools/odm-sdk/terminal/study/uploading-study.md
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Expand Up @@ -67,7 +67,7 @@ Additional optional parameters:
sample/library/preparation name from the measurement name in column headers: `-ms ':'`
or `--measurement-separator ':'`
- to specify the uploaded data as a data class `C`: `-dc 'C'` or `--data-class 'C'`
- The following options are available: `Bulk transcriptomics`, `Single cell transcriptomics`, `Differential abundance (FC, pval, etc.)`, `Pathway analysis`, `Proteomics`, `Single cell proteomics`, `Metabolomics`, `Lipidomics`, `Epigenomics`, `DNA methylation`, `Chemoinformatics`, `Imaging features`, `Gene panel data`, `Biomarker data`, `Physical measures`, `Blood counts`, `Other body fluid counts`, `Nanopore`, `Gene variant (VCF)`, `Flow Cytometry`, `Other`
- The following options are available: `Bulk transcriptomics`, `Single cell transcriptomics`, `Differential abundance (FC, pval, etc.)`, `Pathway analysis`, `Proteomics`, `Single cell proteomics`, `Metabolomics`, `Lipidomics`, `Epigenomics`, `DNA methylation`, `Chemoinformatics`, `Imaging features`, `Gene panel data`, `Biomarker data`, `Physical measures`, `Blood counts`, `Other body fluid counts`, `Long-read sequencing (Nanopore, PacBio)`, `Gene variant (VCF)`, `Flow Cytometry`, `Spatial transcriptomics`, `Phenomics`, `Copy number alterations`, `Microbiome / metagenomics`, `Genetic screens (CRISPR / RNAi)`, `Cell imaging`, `Document`, `Other`

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11 changes: 8 additions & 3 deletions docs/user-guide/doc-odm-user-guide/import-data-in-odm.md
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Expand Up @@ -100,12 +100,17 @@ In addition to the samples, libraries, and preparations metadata described above
- Physical measures
- Blood counts
- Other body fluid counts
- Nanopore
- Long-read sequencing (Nanopore, PacBio)
- Gene variant (VCF) - VCF format
- Flow Cytometry - FACS format
- Spatial transcriptomics
- Phenomics
- Copy number alterations
- Microbiome / metagenomics
- Genetic screens (CRISPR / RNAi)
- Cell imaging
- Document
- Other

- Other

To upload experimental data or attach files, navigate to the **Data Tab**

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