Skip to content

Fixes for Attachment Transformation article #188

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
MikhailAf merged 2 commits into from
Mar 10, 2026
Merged

Fixes for Attachment Transformation article #188

Changes from 1 commit
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
5df3865
fixes
MikhailAf Mar 9, 2026
4445772
job id
MikhailAf Mar 9, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
8 changes: 8 additions & 0 deletions docs/user-guide/doc-odm-user-guide/attachment-transformation.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,9 +12,13 @@ e.g. Samples, Libraries, Preparations, Cell metadata, Expression, Variants, etc.
![Diagram](../doc-odm-user-guide/doc-odm-user-guide/images/attachments-transformation-diagram.png)

## Get the list of available images

Currently ODM has default image called `metadata-basic`.
This image allows user to transform `CSV` files into `TSV` to create Sample group.

!!! danger "`metadata-basic` transformation is introduced just for testing purpose"


To get the list of available images via API go to `processorsController` Swagger definition of endpoints and use
GET `transformations/images`. Endpoint response example:

Expand Down Expand Up @@ -208,3 +212,7 @@ is placed.
As the result new Sample metadata group was created in ODM:

![Sample-group](../doc-odm-user-guide/doc-odm-user-guide/images/attachments-transformation-samples.png)

To retrieve transformation job logs simply use jod id in POST `transformations/jobs/{id}/logs` endpoint.

!!! danger "Transformation job logs are stored for 2 weeks as default in the system"