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5 changes: 5 additions & 0 deletions docs/index.md
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Expand Up @@ -22,6 +22,11 @@ ODM is a comprehensive system designed to simplify and optimise data management

User Profile setup and customisation, working with User Groups

- :octicons-number-16:{ .lg .middle } __[Supported Data Formats](user-guide/supported-data/supported-data.md)__

---
Upload and work with various data files via ODM user interface and API

- :fontawesome-solid-flask-vial:{ .lg .middle } __[User Interface Advanced Guide](user-guide/index.md)__

---
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62 changes: 62 additions & 0 deletions docs/user-guide/supported-data/supported-data.md
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# Supported Data Formats

!!! info "About this guide"
This guide provides a basic overview of file formats and data supported in the ODM.
For a detailed description and instructions on using various data formats and working with them
(sorting, filtering, sampling), visit the **[Supported Data Formats page](../doc-odm-user-guide/supported-formats.md)**
in our **Advanced User Guide**.

<div class="grid cards" markdown>

- :octicons-table-16: __[TSV (Tabular data)](../supported-data/supported-data.md/#tsv-tabular-data)__

---

Upload and manage tabular data (TSV files) seamlessly within the ODM. Work with Samples,
Libraries, Preparations, Expression data, and more.

- :fontawesome-solid-signal:{ .lg .middle } __[GCT (Gene Expression)](../supported-data/supported-data.md/#gct-gene-xpression)__

---

Upload and work with GCT (Gene Cluster Text) files in the Open Data Manager (ODM).
Optimize the analysis of matrix-compatible datasets.

- :material-dna:{ .lg .middle } __[VCF (Variants)](../supported-data/supported-data.md/#vcf-variants)__

---

Upload and work with VCF (Variant Call Format) files to search, filter, retrieve, and analyze
genetic variants in the ODM.

- :fontawesome-solid-disease:{ .lg .middle } __[HDF5 (e.g. Single Cell)](../supported-data/supported-data.md/#hdf5-single-cell)__

---
Upload and store HDF5 (Hierarchical Data Format 5) files as attachments in the ODM. Future releases will enable
seamless analysis of Single Cell data stored within TSV and HDF5 formats.

- :fontawesome-solid-wave-square:{ .lg .middle } __[FACS (Flow Cytometry)](../supported-data/supported-data.md/#facs-flow-cytometry)__

---
Upload and work with FACS (Fluorescence-Activated Cell Sorting) files in the Open Data Manager (ODM)
to efficiently analyze Flow Cytometry data.

- :fontawesome-solid-file-lines:{ .lg .middle } __[Attached Files](../supported-data/supported-data.md/#attached-files)__

---
Upload and organize a diverse range of attached non-indexed files in the ODM.
Easily manage your entire data catalog, access and collaboration across any file types.

</div>

## TSV (Tabular data)

## GCT (Gene xpression)

## VCF (Variants)

## HDF5 (e.g. Single Cell)

## FACS (Flow Cytometry)

## Attached Files
1 change: 1 addition & 0 deletions mkdocs.yml
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Expand Up @@ -15,6 +15,7 @@ nav:
- Administrator: user-guide/quick-start/admin-api.md
- Key Concepts: user-guide/key-concepts/key-concepts.md
- Users, Roles, Permissions: user-guide/users-roles-permissions/users-roles-permissions.md
- Supported Data Formats: user-guide/supported-data/supported-data.md
- Guides:
- User Interface Advanced Guide:
- user-guide/index.md
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