-
Notifications
You must be signed in to change notification settings - Fork 4
WIP: data in the cloud module #44
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Draft
maxrjones
wants to merge
27
commits into
main
Choose a base branch
from
module-4
base: main
Could not load branches
Branch not found: {{ refName }}
Loading
Could not load tags
Nothing to show
Loading
Are you sure you want to change the base?
Some commits from the old base branch may be removed from the timeline,
and old review comments may become outdated.
+3,619
−146
Draft
Changes from 2 commits
Commits
Show all changes
27 commits
Select commit
Hold shift + click to select a range
08a9405
Start to data in the cloud modules
maxrjones 05218db
Fixup
maxrjones 3355eeb
Codespell: Ignore base64-looking strings, e.g. Notebook outputs
mfisher87 9ecaa59
Adjust AWS link targets to try and fix failed link check
mfisher87 2823797
Fixup AWS URL
mfisher87 980ad2b
Move learning objectives into "where we are going" callout
mfisher87 8daced9
Copy frontmatter from Markdown -> NB
mfisher87 279b37d
Cleanup some blank lines
mfisher87 2d056ba
Remove redundant index.md
mfisher87 cce1ff3
Consistent capitalization
mfisher87 389fb34
Adjust wording for clarity
mfisher87 f2d03b2
Emphasize statement about risk
mfisher87 bb65e18
Fixup schedule link
mfisher87 0a9c63f
Add obstore, obspec-utils to environment
mfisher87 96d79ba
Print out the list of files
mfisher87 d430140
Move dependencies to Docker image
mfisher87 41dc527
Address comments
maxrjones d520ffa
Allow building site on macos
maxrjones 62d7764
Re-add module-level project toml
maxrjones 119b2bd
Add uv/pixi to image
maxrjones 1f7dd53
Progress
maxrjones 9958795
Merge branch 'main' into module-4
maxrjones 0d86092
Pin to working versions
maxrjones 545d87d
Commit results
maxrjones 469494a
Add local results
maxrjones 351c8fb
Merge branch 'main' into module-4
maxrjones ba68a77
Remove obstore
maxrjones File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
There are no files selected for viewing
Large diffs are not rendered by default.
Oops, something went wrong.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| [project] | ||
| name = "04-data-in-the-cloud" | ||
| version = "0.1.0" | ||
| description = "Dependencies for module 4 - Data in the Cloud" | ||
| readme = "README.md" | ||
| requires-python = ">=3.14" | ||
| dependencies = [ | ||
| "fsspec>=2025.10.0", | ||
| "h5netcdf>=1.7.3", | ||
| "icechunk>=1.1.12", | ||
| "ipykernel>=7.1.0", | ||
| "obspec-utils>=0.1.0", | ||
| "obstore>=0.8.2", | ||
| "s3fs>=2025.10.0", | ||
| "virtualizarr>=2.2.1", | ||
| ] |
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I like the idea of having dependencies specified for each module, but I think logistically, it makes the most sense to toss these in to one big conda environment users will use for the whole workshop.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I think this makes sense for the workshop. I also would like to provide the pixi files as a separate option, so that people interested in following along with the entire course could use the docker file but anyone who wants to try out just this module can use the pixi environment.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I think that makes sense. Perhaps we should all do this for our modules. Any thoughts on keeping all these environment files up-to-date?
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I'll plan to run the tutorial using either option to make sure everything runs correctly. I don't think we should try to get the environments to be identical, since the dependency solving will change between the more limited and larger environment sizes.