fix(core): enable granular shell command allowlisting in policy engine

packages/core/src/confirmation-bus/types.ts

@@ -41,7 +41,7 @@ export interface UpdatePolicy {
   toolName: string;
   persist?: boolean;
   argsPattern?: string;
-  commandPrefix?: string;
+  commandPrefix?: string | string[];
   mcpName?: string;
 }
 

packages/core/src/policy/config.ts

@@ -245,7 +245,7 @@ interface TomlRule {
   mcpName?: string;
   decision?: string;
   priority?: number;
-  commandPrefix?: string;
+  commandPrefix?: string | string[];
   argsPattern?: string;
   // Index signature to satisfy Record type if needed for toml.stringify
   [key: string]: unknown;
@@ -259,26 +259,45 @@ export function createPolicyUpdater(
     MessageBusType.UPDATE_POLICY,
     async (message: UpdatePolicy) => {
       const toolName = message.toolName;
-      let argsPattern = message.argsPattern
-        ? new RegExp(message.argsPattern)
-        : undefined;
 
       if (message.commandPrefix) {
-        // Convert commandPrefix to argsPattern for in-memory rule
-        // This mimics what toml-loader does
-        const escapedPrefix = escapeRegex(message.commandPrefix);
-        argsPattern = new RegExp(`"command":"${escapedPrefix}`);
-      }
+        // Convert commandPrefix(es) to argsPatterns for in-memory rules
+        const prefixes = Array.isArray(message.commandPrefix)
+          ? message.commandPrefix
+          : [message.commandPrefix];
+
+        for (const prefix of prefixes) {
+          const escapedPrefix = escapeRegex(prefix);
+          // Use robust regex to match whole words (e.g. "git" but not "github")
+          const argsPattern = new RegExp(
+            `"command":"${escapedPrefix}(?:[\\s"]|$)`,
+          );
 
-      policyEngine.addRule({
-        toolName,
-        decision: PolicyDecision.ALLOW,
-        // User tier (2) + high priority (950/1000) = 2.95
-        // This ensures user "always allow" selections are high priority
-        // but still lose to admin policies (3.xxx) and settings excludes (200)
-        priority: 2.95,
-        argsPattern,
-      });
+          policyEngine.addRule({
+            toolName,
+            decision: PolicyDecision.ALLOW,
+            // User tier (2) + high priority (950/1000) = 2.95
+            // This ensures user "always allow" selections are high priority
+            // but still lose to admin policies (3.xxx) and settings excludes (200)
+            priority: 2.95,
+            argsPattern,
+          });
+        }
+      } else {
+        const argsPattern = message.argsPattern
+          ? new RegExp(message.argsPattern)
+          : undefined;
+
+        policyEngine.addRule({
+          toolName,
+          decision: PolicyDecision.ALLOW,
+          // User tier (2) + high priority (950/1000) = 2.95
+          // This ensures user "always allow" selections are high priority
+          // but still lose to admin policies (3.xxx) and settings excludes (200)
+          priority: 2.95,
+          argsPattern,
+        });
+      }
 
       if (message.persist) {
         try {

packages/core/src/policy/persistence.test.ts

@@ -126,7 +126,9 @@ describe('createPolicyUpdater', () => {
     const addedRule = rules.find((r) => r.toolName === toolName);
     expect(addedRule).toBeDefined();
     expect(addedRule?.priority).toBe(2.95);
-    expect(addedRule?.argsPattern).toEqual(new RegExp(`"command":"git status`));
+    expect(addedRule?.argsPattern).toEqual(
+      new RegExp(`"command":"git status(?:[\\s"]|$)`),
+    );
 
     // Verify file written
     expect(fs.writeFile).toHaveBeenCalledWith(

packages/core/src/policy/policy-updater.test.ts

@@ -0,0 +1,190 @@
+/**
+ * @license
+ * Copyright 2025 Google LLC
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+import { describe, it, expect, vi, beforeEach, afterEach } from 'vitest';
+import * as fs from 'node:fs/promises';
+import { createPolicyUpdater } from './config.js';
+import { PolicyEngine } from './policy-engine.js';
+import { MessageBus } from '../confirmation-bus/message-bus.js';
+import { MessageBusType } from '../confirmation-bus/types.js';
+import { Storage } from '../config/storage.js';
+import toml from '@iarna/toml';
+import { ShellToolInvocation } from '../tools/shell.js';
+import { type Config } from '../config/config.js';
+import {
+  ToolConfirmationOutcome,
+  type PolicyUpdateOptions,
+} from '../tools/tools.js';
+import * as shellUtils from '../utils/shell-utils.js';
+
+vi.mock('node:fs/promises');
+vi.mock('../config/storage.js');
+vi.mock('../utils/shell-utils.js', () => ({
+  getCommandRoots: vi.fn(),
+  stripShellWrapper: vi.fn(),
+}));
+interface ParsedPolicy {
+  rule?: Array<{
+    commandPrefix?: string | string[];
+  }>;
+}
+
+interface TestableShellToolInvocation {
+  getPolicyUpdateOptions(
+    outcome: ToolConfirmationOutcome,
+  ): PolicyUpdateOptions | undefined;
+}
+
+describe('createPolicyUpdater', () => {
+  let policyEngine: PolicyEngine;
+  let messageBus: MessageBus;
+
+  beforeEach(() => {
+    vi.resetAllMocks();
+    policyEngine = new PolicyEngine({});
+    vi.spyOn(policyEngine, 'addRule');
+
+    messageBus = new MessageBus(policyEngine);
+    vi.spyOn(Storage, 'getUserPoliciesDir').mockReturnValue(
+      '/mock/user/policies',
+    );
+  });
+
+  afterEach(() => {
+    vi.restoreAllMocks();
+  });
+
+  it('should add multiple rules when commandPrefix is an array', async () => {
+    createPolicyUpdater(policyEngine, messageBus);
+
+    await messageBus.publish({
+      type: MessageBusType.UPDATE_POLICY,
+      toolName: 'run_shell_command',
+      commandPrefix: ['echo', 'ls'],
+      persist: false,
+    });
+
+    expect(policyEngine.addRule).toHaveBeenCalledTimes(2);
+    expect(policyEngine.addRule).toHaveBeenNthCalledWith(
+      1,
+      expect.objectContaining({
+        toolName: 'run_shell_command',
+        argsPattern: new RegExp('"command":"echo(?:[\\s"]|$)'),
+      }),
+    );
+    expect(policyEngine.addRule).toHaveBeenNthCalledWith(
+      2,
+      expect.objectContaining({
+        toolName: 'run_shell_command',
+        argsPattern: new RegExp('"command":"ls(?:[\\s"]|$)'),
+      }),
+    );
+  });
+
+  it('should add a single rule when commandPrefix is a string', async () => {
+    createPolicyUpdater(policyEngine, messageBus);
+
+    await messageBus.publish({
+      type: MessageBusType.UPDATE_POLICY,
+      toolName: 'run_shell_command',
+      commandPrefix: 'git',
+      persist: false,
+    });
+
+    expect(policyEngine.addRule).toHaveBeenCalledTimes(1);
+    expect(policyEngine.addRule).toHaveBeenCalledWith(
+      expect.objectContaining({
+        toolName: 'run_shell_command',
+        argsPattern: new RegExp('"command":"git(?:[\\s"]|$)'),
+      }),
+    );
+  });
+
+  it('should persist multiple rules correctly to TOML', async () => {
+    createPolicyUpdater(policyEngine, messageBus);
+    vi.mocked(fs.readFile).mockRejectedValue({ code: 'ENOENT' });
+    vi.mocked(fs.mkdir).mockResolvedValue(undefined);
+    vi.mocked(fs.writeFile).mockResolvedValue(undefined);
+    vi.mocked(fs.rename).mockResolvedValue(undefined);
+
+    await messageBus.publish({
+      type: MessageBusType.UPDATE_POLICY,
+      toolName: 'run_shell_command',
+      commandPrefix: ['echo', 'ls'],
+      persist: true,
+    });
+
+    // Wait for the async listener to complete
+    await new Promise((resolve) => setTimeout(resolve, 0));
+
+    expect(fs.writeFile).toHaveBeenCalled();
+    const [_path, content] = vi.mocked(fs.writeFile).mock.calls[0] as [
+      string,
+      string,
+    ];
+    const parsed = toml.parse(content) as unknown as ParsedPolicy;
+
+    expect(parsed.rule).toHaveLength(1);
+    expect(parsed.rule![0].commandPrefix).toEqual(['echo', 'ls']);
+  });
+});
+
+describe('ShellToolInvocation Policy Update', () => {
+  let mockConfig: Config;
+  let mockMessageBus: MessageBus;
+
+  beforeEach(() => {
+    vi.resetAllMocks();
+    mockConfig = {} as Config;
+    mockMessageBus = {} as MessageBus;
+
+    vi.mocked(shellUtils.stripShellWrapper).mockImplementation(
+      (c: string) => c,
+    );
+  });
+
+  it('should extract multiple root commands for chained commands', () => {
+    vi.mocked(shellUtils.getCommandRoots).mockReturnValue(['git', 'npm']);
+
+    const invocation = new ShellToolInvocation(
+      mockConfig,
+      { command: 'git status && npm test' },
+      new Set(),
+      mockMessageBus,
+      'run_shell_command',
+      'Shell',
+    );
+
+    // Accessing protected method for testing
+    const options = (
+      invocation as unknown as TestableShellToolInvocation
+    ).getPolicyUpdateOptions(ToolConfirmationOutcome.ProceedAlways);
+    expect(options!.commandPrefix).toEqual(['git', 'npm']);
+    expect(shellUtils.getCommandRoots).toHaveBeenCalledWith(
+      'git status && npm test',
+    );
+  });
+
+  it('should extract a single root command', () => {
+    vi.mocked(shellUtils.getCommandRoots).mockReturnValue(['ls']);
+
+    const invocation = new ShellToolInvocation(
+      mockConfig,
+      { command: 'ls -la /tmp' },
+      new Set(),
+      mockMessageBus,
+      'run_shell_command',
+      'Shell',
+    );
+
+    // Accessing protected method for testing
+    const options = (
+      invocation as unknown as TestableShellToolInvocation
+    ).getPolicyUpdateOptions(ToolConfirmationOutcome.ProceedAlways);
+    expect(options!.commandPrefix).toEqual(['ls']);
+    expect(shellUtils.getCommandRoots).toHaveBeenCalledWith('ls -la /tmp');
+  });
+});

packages/core/src/tools/shell.ts

@@ -89,7 +89,15 @@ export class ShellToolInvocation extends BaseToolInvocation<
   protected override getPolicyUpdateOptions(
     outcome: ToolConfirmationOutcome,
   ): PolicyUpdateOptions | undefined {
-    if (outcome === ToolConfirmationOutcome.ProceedAlwaysAndSave) {
+    if (
+      outcome === ToolConfirmationOutcome.ProceedAlwaysAndSave ||
+      outcome === ToolConfirmationOutcome.ProceedAlways
+    ) {
+      const command = stripShellWrapper(this.params.command);
+      const rootCommands = [...new Set(getCommandRoots(command))];
+      if (rootCommands.length > 0) {
+        return { commandPrefix: rootCommands };
+      }
       return { commandPrefix: this.params.command };
     }
     return undefined;

packages/core/src/tools/tools.ts

@@ -69,7 +69,7 @@ export interface ToolInvocation<
  * Options for policy updates that can be customized by tool invocations.
  */
 export interface PolicyUpdateOptions {
-  commandPrefix?: string;
+  commandPrefix?: string | string[];
   mcpName?: string;
 }