Improved Documentation and Tooling

[allenday]

This pull request introduces significant enhancements to the multi-agent system, focusing on documentation improvements, tool enhancements, and comprehensive testing.

The changes aim to improve usability, maintainability, and functionality across the system.

Key Changes:

1. Documentation:

• Updated .cursorrules with detailed descriptions of common options and core tools.
• Enhanced README.md with comprehensive usage instructions, including coverage analysis for tests.
• Improved clarity and consistency in documentation formatting and structure.

2. Tool Enhancements:

• Refined CLI tools with additional options and improved logging configurations.
• Enhanced error handling and output formatting across various tools.
• Updated pytest.ini to configure test settings and suppress specific warnings.

3. Testing:

• Added new test cases for CLI, formatting, logging, and various tool functionalities.
• Added coverage testing capability, ensured all tools have > 60% coverage
• Improved existing test coverage and refactored tests for better reliability and readability.

4. Code Improvements:

• Refactored core tool scripts for better performance and maintainability.
• Enhanced logging and error handling mechanisms across the codebase.
• Streamlined code structure and removed redundant code.

Impact:

These changes collectively enhance the multi-agent system's capabilities, making it more robust, user-friendly, and easier to maintain.

The improved documentation and testing ensure that users can effectively utilize the system's features while maintaining high code quality.

[allenday]

@grapeot please close this pull request, it needs more testing.

[grapeot]

Thanks a lot @allenday ! Really appreciate it! Feel free to reopen it when you feel it's more ready for a review.