Merge the functions of panqc to reduce redundancy

[Dx-wmc]

Hi, I have been using Panaroo for a long time, but I have been troubled by the redundancy and incompleteness of gene annotation in different software. I have read PanQC and used this software (https://github.com/maxgmarin/panqc). According to the author's introduction, it can remove the redundancy caused by software annotation. Can this software be integrated into Panaroo as an additional sub-function?

[gtonkinhill]

Panaroo already includes methods to address redundancy and incompleteness, though it's not perfect. Running PanQC can slightly improve results (~0.7% from the manuscript), but only when users aren't concerned with splitting paralogues. While integrating it into the pipeline would be great, I am afraid I likely won't have time for it in the near future.