Search results

Core gene alignment - FileNotFoundError - missing aligned_gene_sequences folder

Status: Open.

#368 In gtonkinhill/panaroo;

· djbradshaw2 opened on Feb 27, 2026

Match gene list to protein/dna sequence

Status: Open.

#367 In gtonkinhill/panaroo;

· lfenske-93 opened on Feb 26, 2026

ValueError: No records found in handle

Status: Open.

#366 In gtonkinhill/panaroo;

· anhvu989 opened on Feb 21, 2026

Does synteny cause issues for middle-quality MAGs?

Status: Open.

#365 In gtonkinhill/panaroo;

· HongyuDD opened on Feb 9, 2026

Question regarding paralogs

Status: Open.

#364 In gtonkinhill/panaroo;

· jessydit opened on Feb 4, 2026

Panaroo killed due to memory usage

Status: Open.

#362 In gtonkinhill/panaroo;

· mikhailova-es opened on Jan 6, 2026

[Conda] [Mamba] Panaroo cannot be installed into environment with Python 3.13

Status: Open.

#351 In gtonkinhill/panaroo;

· PlatonB opened on Oct 19, 2025

Is it possible to add a tag --pangenome-id to get the column of the pangenome-id added to the gene_presence_absence.csv

enhancementNew feature or requestNew feature or request

Status: Open.

#342 In gtonkinhill/panaroo;

· Isoris opened on Aug 4, 2025

Problem with XX_Refound_YY entries

enhancementNew feature or requestNew feature or request

Status: Open.

#332 In gtonkinhill/panaroo;

· PDAldridge opened on Mar 12, 2025

Merge the functions of panqc to reduce redundancy

enhancementNew feature or requestNew feature or request

Status: Open.

#331 In gtonkinhill/panaroo;

· Dx-wmc opened on Mar 3, 2025

Broken error handling in multithread_codonalign_build

bugSomething isn't workingSomething isn't working

Status: Open.

#310 In gtonkinhill/panaroo;

· revinici opened on Oct 1, 2024

Sporadic KeyError exceptions raised during collapse_families

irreproduciblepotential bug but has not been replicatedpotential bug but has not been replicated

Status: Open.

#307 In gtonkinhill/panaroo;

· revinici opened on Aug 21, 2024